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Makefile.in
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Makefile.in
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# Makefile.in generated by automake 1.16.3 from Makefile.am.
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art_illumina_src/art_illumina.cpp art_illumina_src/art_qual_scale.cpp art_illumina_src/empdist.cpp art_illumina_src/cvgdist.cpp art_illumina_src/readSeqFile.cpp art_illumina_src/seqRead.cpp art_illumina_src/samRead.cpp
art_454_SOURCES = art_454_src/art.h art_454_src/read_profile.h art_454_src/readSeqFile.h art_454_src/seqRead.h art_454_src/samRead.h \
art_454_src/art_454.cpp art_454_src/art.cpp art_454_src/read_profile.cpp art_454_src/readSeqFile.cpp art_454_src/seqRead.cpp art_454_src/samRead.cpp
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dist_bin_SCRIPTS = aln2bed.pl map2bed.pl ART_profiler_454/art_profiler_454 ART_profiler_illumina/combinedAvg.pl ART_profiler_illumina/fastqReadAvg.pl ART_profiler_illumina/art_profiler_illumina ART_profiler_illumina/empDist.pl ART_profiler_illumina/summation.pl
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# tarfile.
distcheck: dist
case '$(DIST_ARCHIVES)' in \
*.tar.gz*) \
eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).tar.gz | $(am__untar) ;;\
*.tar.bz2*) \
bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
*.tar.lz*) \
lzip -dc $(distdir).tar.lz | $(am__untar) ;;\
*.tar.xz*) \
xz -dc $(distdir).tar.xz | $(am__untar) ;;\
*.tar.Z*) \
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
*.shar.gz*) \
eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).shar.gz | unshar ;;\
*.zip*) \
unzip $(distdir).zip ;;\
*.tar.zst*) \
zstd -dc $(distdir).tar.zst | $(am__untar) ;;\
esac
chmod -R a-w $(distdir)
chmod u+w $(distdir)
mkdir $(distdir)/_build $(distdir)/_build/sub $(distdir)/_inst
chmod a-w $(distdir)
test -d $(distdir)/_build || exit 0; \
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
&& am__cwd=`pwd` \
&& $(am__cd) $(distdir)/_build/sub \
&& ../../configure \
$(AM_DISTCHECK_CONFIGURE_FLAGS) \
$(DISTCHECK_CONFIGURE_FLAGS) \
--srcdir=../.. --prefix="$$dc_install_base" \
&& $(MAKE) $(AM_MAKEFLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) $(AM_DISTCHECK_DVI_TARGET) \
&& $(MAKE) $(AM_MAKEFLAGS) check \
&& $(MAKE) $(AM_MAKEFLAGS) install \
&& $(MAKE) $(AM_MAKEFLAGS) installcheck \
&& $(MAKE) $(AM_MAKEFLAGS) uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
distuninstallcheck \
&& chmod -R a-w "$$dc_install_base" \
&& ({ \
(cd ../.. && umask 077 && mkdir "$$dc_destdir") \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
} || { rm -rf "$$dc_destdir"; exit 1; }) \
&& rm -rf "$$dc_destdir" \
&& $(MAKE) $(AM_MAKEFLAGS) dist \
&& rm -rf $(DIST_ARCHIVES) \
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
&& cd "$$am__cwd" \
|| exit 1
$(am__post_remove_distdir)
@(echo "$(distdir) archives ready for distribution: "; \
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
distuninstallcheck:
@test -n '$(distuninstallcheck_dir)' || { \
echo 'ERROR: trying to run $@ with an empty' \
'$$(distuninstallcheck_dir)' >&2; \
exit 1; \
}; \
$(am__cd) '$(distuninstallcheck_dir)' || { \
echo 'ERROR: cannot chdir into $(distuninstallcheck_dir)' >&2; \
exit 1; \
}; \
test `$(am__distuninstallcheck_listfiles) | wc -l` -eq 0 \
|| { echo "ERROR: files left after uninstall:" ; \
if test -n "$(DESTDIR)"; then \
echo " (check DESTDIR support)"; \
fi ; \
$(distuninstallcheck_listfiles) ; \
exit 1; } >&2
distcleancheck: distclean
@if test '$(srcdir)' = . ; then \
echo "ERROR: distcleancheck can only run from a VPATH build" ; \
exit 1 ; \
fi
@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
|| { echo "ERROR: files left in build directory after distclean:" ; \
$(distcleancheck_listfiles) ; \
exit 1; } >&2
check-am: all-am
check: check-am
all-am: Makefile $(PROGRAMS) $(SCRIPTS) config.h
installdirs:
for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)"; do \
test -z "$$dir" || $(MKDIR_P) "$$dir"; \
done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-am
install-strip:
if test -z '$(STRIP)'; then \
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
install; \
else \
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
"INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
fi
mostlyclean-generic:
clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
-rm -f art_454_src/$(DEPDIR)/$(am__dirstamp)
-rm -f art_454_src/$(am__dirstamp)
-rm -f art_SOLiD_src/$(DEPDIR)/$(am__dirstamp)
-rm -f art_SOLiD_src/$(am__dirstamp)
-rm -f art_illumina_src/$(DEPDIR)/$(am__dirstamp)
-rm -f art_illumina_src/$(am__dirstamp)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
clean: clean-am
clean-am: clean-binPROGRAMS clean-generic mostlyclean-am
distclean: distclean-am
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -f art_454_src/$(DEPDIR)/art.Po
-rm -f art_454_src/$(DEPDIR)/art_454.Po
-rm -f art_454_src/$(DEPDIR)/readSeqFile.Po
-rm -f art_454_src/$(DEPDIR)/read_profile.Po
-rm -f art_454_src/$(DEPDIR)/samRead.Po
-rm -f art_454_src/$(DEPDIR)/seqRead.Po
-rm -f art_SOLiD_src/$(DEPDIR)/art.Po
-rm -f art_SOLiD_src/$(DEPDIR)/art_SOLiD.Po
-rm -f art_SOLiD_src/$(DEPDIR)/readSeqFile.Po
-rm -f art_SOLiD_src/$(DEPDIR)/read_SOLiD.Po
-rm -f art_SOLiD_src/$(DEPDIR)/samRead.Po
-rm -f art_illumina_src/$(DEPDIR)/art_illumina.Po
-rm -f art_illumina_src/$(DEPDIR)/art_qual_scale.Po
-rm -f art_illumina_src/$(DEPDIR)/cvgdist.Po
-rm -f art_illumina_src/$(DEPDIR)/empdist.Po
-rm -f art_illumina_src/$(DEPDIR)/readSeqFile.Po
-rm -f art_illumina_src/$(DEPDIR)/samRead.Po
-rm -f art_illumina_src/$(DEPDIR)/seqRead.Po
-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
distclean-hdr distclean-tags
dvi: dvi-am
dvi-am:
html: html-am
html-am:
info: info-am
info-am:
install-data-am:
install-dvi: install-dvi-am
install-dvi-am:
install-exec-am: install-binPROGRAMS install-dist_binSCRIPTS
install-html: install-html-am
install-html-am:
install-info: install-info-am
install-info-am:
install-man:
install-pdf: install-pdf-am
install-pdf-am:
install-ps: install-ps-am
install-ps-am:
installcheck-am:
maintainer-clean: maintainer-clean-am
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -rf $(top_srcdir)/autom4te.cache
-rm -f art_454_src/$(DEPDIR)/art.Po
-rm -f art_454_src/$(DEPDIR)/art_454.Po
-rm -f art_454_src/$(DEPDIR)/readSeqFile.Po
-rm -f art_454_src/$(DEPDIR)/read_profile.Po
-rm -f art_454_src/$(DEPDIR)/samRead.Po
-rm -f art_454_src/$(DEPDIR)/seqRead.Po
-rm -f art_SOLiD_src/$(DEPDIR)/art.Po
-rm -f art_SOLiD_src/$(DEPDIR)/art_SOLiD.Po
-rm -f art_SOLiD_src/$(DEPDIR)/readSeqFile.Po
-rm -f art_SOLiD_src/$(DEPDIR)/read_SOLiD.Po
-rm -f art_SOLiD_src/$(DEPDIR)/samRead.Po
-rm -f art_illumina_src/$(DEPDIR)/art_illumina.Po
-rm -f art_illumina_src/$(DEPDIR)/art_qual_scale.Po
-rm -f art_illumina_src/$(DEPDIR)/cvgdist.Po
-rm -f art_illumina_src/$(DEPDIR)/empdist.Po
-rm -f art_illumina_src/$(DEPDIR)/readSeqFile.Po
-rm -f art_illumina_src/$(DEPDIR)/samRead.Po
-rm -f art_illumina_src/$(DEPDIR)/seqRead.Po
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-am
mostlyclean-am: mostlyclean-compile mostlyclean-generic
pdf: pdf-am
pdf-am:
ps: ps-am