diff --git a/tools/squidpy/squidpy_spatial.xml b/tools/squidpy/squidpy_spatial.xml index 72dcb04..4836377 100644 --- a/tools/squidpy/squidpy_spatial.xml +++ b/tools/squidpy/squidpy_spatial.xml @@ -19,7 +19,9 @@ #if $analyses.selected_tool in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']: --output_plot "`pwd`/image.png" #end if - + #if $analyses.selected_tool in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']: + && mv "`pwd`/image.png" "final_image.png" + #end if ]]> @@ -246,7 +248,7 @@ - + analyses['selected_tool'] in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']