From be0710568c857027fb0f149f4a3f8b318aa40a09 Mon Sep 17 00:00:00 2001 From: A108384 Date: Sat, 17 Aug 2024 15:28:35 -0400 Subject: [PATCH] Jabref: Update to 5.15 along with packaging fixes **Summary** - Update from 5.5 to 5.15 [changelogs](https://github.com/JabRef/jabref/releases) - Add homepage to package.yml - Update to openjdk-21 - Include new MAINTAINERS.md - Include monitoring.yml - Include appstream metainfo - Resolves (https://github.com/getsolus/packages/issues/3086) - Resolves (https://github.com/getsolus/packages/pull/2642) --- packages/j/jabref/MAINTAINERS.md | 5 + packages/j/jabref/abi_libs | 33 + packages/j/jabref/abi_symbols | 1849 +++++++++++++++++ packages/j/jabref/abi_used_libs | 18 + packages/j/jabref/abi_used_symbols | 894 ++++++++ packages/j/jabref/files/jabref.desktop | 2 + packages/j/jabref/files/jabref.sh | 4 +- .../files/org.jabref.jabref.appdata.xml | 52 + packages/j/jabref/monitoring.yml | 7 + packages/j/jabref/package.yml | 42 +- packages/j/jabref/pspec_x86_64.xml | 772 +++++-- 11 files changed, 3542 insertions(+), 136 deletions(-) create mode 100644 packages/j/jabref/MAINTAINERS.md create mode 100644 packages/j/jabref/abi_libs create mode 100644 packages/j/jabref/abi_symbols create mode 100644 packages/j/jabref/abi_used_libs create mode 100644 packages/j/jabref/abi_used_symbols create mode 100644 packages/j/jabref/files/org.jabref.jabref.appdata.xml create mode 100644 packages/j/jabref/monitoring.yml diff --git a/packages/j/jabref/MAINTAINERS.md b/packages/j/jabref/MAINTAINERS.md new file mode 100644 index 00000000000..6565f01d7d0 --- /dev/null +++ b/packages/j/jabref/MAINTAINERS.md @@ -0,0 +1,5 @@ +This file is used to indicate primary maintainership for this package. A package may list more than one maintainer to avoid bus factor issues. People on this list may be considered “subject-matter experts”. Please note that Solus Staff may need to perform necessary rebuilds, upgrades, or security fixes as part of the normal maintenance of the Solus package repository. If you believe this package requires an update, follow documentation from https://help.getsol.us/docs/packaging/procedures/request-a-package-update. In the event that this package becomes insufficiently maintained, the Solus Staff reserves the right to request a new maintainer, or deprecate and remove this package from the repository entirely. + +- CliffordRed Gum + - Matrix: @ever_reddy:matrix.org + - Email: a108384@gmail.com diff --git a/packages/j/jabref/abi_libs b/packages/j/jabref/abi_libs new file mode 100644 index 00000000000..1edd7ac354c --- /dev/null +++ b/packages/j/jabref/abi_libs @@ -0,0 +1,33 @@ +jspawnhelper +libattach.so +libawt.so +libawt_headless.so +libawt_xawt.so +libdt_socket.so +libextnet.so +libfontmanager.so +libj2gss.so +libj2pcsc.so +libj2pkcs11.so +libjaas.so +libjava.so +libjavajpeg.so +libjawt.so +libjdwp.so +libjimage.so +libjli.so +libjsig.so +libjsound.so +libjvm.so +liblcms.so +lible.so +libmanagement.so +libmanagement_ext.so +libmlib_image.so +libnet.so +libnio.so +libprefs.so +librmi.so +libsplashscreen.so +libverify.so +libzip.so diff --git a/packages/j/jabref/abi_symbols b/packages/j/jabref/abi_symbols new file mode 100644 index 00000000000..44de088e821 --- /dev/null +++ b/packages/j/jabref/abi_symbols @@ -0,0 +1,1849 @@ +jspawnhelper:error +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_checkPermissions +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_close +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_connect +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_read +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_sendQuitTo +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_socket +libattach.so:Java_sun_tools_attach_VirtualMachineImpl_write +libawt.so:AWTIsHeadless +libawt.so:Disposer_AddRecord +libawt.so:GetNativePrim +libawt.so:GrPrim_CompGetAlphaInfo +libawt.so:GrPrim_CompGetXorColor +libawt.so:GrPrim_CompGetXorInfo +libawt.so:GrPrim_Sg2dGetClip +libawt.so:GrPrim_Sg2dGetCompInfo +libawt.so:GrPrim_Sg2dGetEaRGB +libawt.so:GrPrim_Sg2dGetLCDTextContrast +libawt.so:GrPrim_Sg2dGetPixel +libawt.so:J2dTraceImpl 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+libstdc++.so.6:_ZdlPv +libstdc++.so.6:_Znam +libstdc++.so.6:_Znwm +libstdc++.so.6:__cxa_begin_catch +libstdc++.so.6:__cxa_demangle +libstdc++.so.6:__cxa_guard_acquire +libstdc++.so.6:__cxa_guard_release +libstdc++.so.6:__cxa_pure_virtual +libstdc++.so.6:__cxa_thread_atexit +libstdc++.so.6:__gxx_personality_v0 +libz.so.1:adler32 +libz.so.1:crc32 +libz.so.1:deflate +libz.so.1:deflateBound +libz.so.1:deflateEnd +libz.so.1:deflateInit2_ +libz.so.1:deflateParams +libz.so.1:deflateReset +libz.so.1:deflateSetDictionary +libz.so.1:deflateSetHeader +libz.so.1:inflate +libz.so.1:inflateEnd +libz.so.1:inflateInit2_ +libz.so.1:inflateReset +libz.so.1:inflateSetDictionary diff --git a/packages/j/jabref/files/jabref.desktop b/packages/j/jabref/files/jabref.desktop index 7b46fe540db..247daf6dc84 100644 --- a/packages/j/jabref/files/jabref.desktop +++ b/packages/j/jabref/files/jabref.desktop @@ -1,7 +1,9 @@ [Desktop Entry] Name=JabRef +GenericName=BibTex Editor Exec=jabref Icon=jabref Terminal=false Type=Application +Comment=JabRef Bibliography Management Categories=Office; diff --git a/packages/j/jabref/files/jabref.sh b/packages/j/jabref/files/jabref.sh index dae7fb847fe..156fd7bc1f0 100644 --- a/packages/j/jabref/files/jabref.sh +++ b/packages/j/jabref/files/jabref.sh @@ -1,7 +1,9 @@ #!/bin/sh if [ -z "$JAVA_HOME" ]; then - export JAVA_HOME=/usr/lib64/openjdk-17 + export JAVA_HOME=/usr/lib64/openjdk-21 fi +export JAB_REF_OPTS="--patch-module org.jabref=/usr/share/jabref/resources/main" + exec /usr/share/jabref/bin/JabRef "$@" diff --git a/packages/j/jabref/files/org.jabref.jabref.appdata.xml b/packages/j/jabref/files/org.jabref.jabref.appdata.xml new file mode 100644 index 00000000000..33f52fc5dca --- /dev/null +++ b/packages/j/jabref/files/org.jabref.jabref.appdata.xml @@ -0,0 +1,52 @@ + + + org.jabref.jabref + + JabRef + Graphical Java application for managing BibTeX and biblatex (.bib) databases + https://www.jabref.org + MIT + MIT + + + JabRef + + + +

+ JabRef is an open-source, cross-platform citation and reference management tool. Stay on top of your literature: JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + org.jabref.jabref.desktop + + + https://raw.githubusercontent.com/JabRef/jabref/0c7f16c5a4553b4066f2bbc607758a482ce9e488/docs/images/jabref-mainscreen.png + + + diff --git a/packages/j/jabref/monitoring.yml b/packages/j/jabref/monitoring.yml new file mode 100644 index 00000000000..226bc42351a --- /dev/null +++ b/packages/j/jabref/monitoring.yml @@ -0,0 +1,7 @@ +releases: + id: 8903 + rss: https://github.com/JabRef/jabref/tags.atom +security: + cpe: + - vendor: jabref + - product: jabref diff --git a/packages/j/jabref/package.yml b/packages/j/jabref/package.yml index 460fda88faa..3873cb21db5 100644 --- a/packages/j/jabref/package.yml +++ b/packages/j/jabref/package.yml @@ -1,34 +1,44 @@ name : jabref -version : '5.5' -release : 4 +version : '5.15' +release : 5 source : - - https://github.com/JabRef/jabref/archive/refs/tags/v5.5.tar.gz : af0d7c5566aec94ffa8b5912c116956ccf17331e5b46bb5adbd6afeaa85ac230 + - https://github.com/JabRef/jabref/archive/refs/tags/v5.15.tar.gz : 2bf75d7f96aa1f5c74b675e3e0b4dda703027b3c3d8ede0616dd2218f5a74259 +homepage : https://jabref.org license : MIT component : office -summary : Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases +summary : JabRef Bibliography Management description: | - Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases + JabRef is an open-source, cross-platform citation and reference management tool. + JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. builddeps : + - binutils - gradle - - openjdk-17 + - openjdk-21 rundeps : - - openjdk-17 + - openjdk-21 networking : yes environment: | - export JAVA_HOME=/usr/lib64/openjdk-17 + export JAVA_HOME=/usr/lib64/openjdk-21 export PATH=$JAVA_HOME/bin:$PATH - export GRADLE_USER_HOME=$workdir build : | - gradle \ - --no-daemon \ - -PprojVersionInfo=$version \ - -PprojVersion=$version \ - assemble + gradle assemble --no-daemon --no-build-cache -PprojVersionInfo=$version -PprojVersion=$version install : | + # create share/jabref directory and copy needed components + install -d -m 00644 $installdir/usr/share/jabref + cp -r licenses $installdir/usr/share/jabref/ + cp -r build/resources $installdir/usr/share/jabref/ + tar -xf build/distributions/JabRef-%version%.tar -C $installdir/usr/share/jabref --strip-components=1 + rm $installdir/usr/share/jabref/bin/JabRef.bat + + # include startup script and desktop files + # Adapted patch-module parameter in jabref.sh from: https://github.com/michaellass/AUR/tree/master/jabref install -D -m 00755 $pkgfiles/jabref.sh $installdir/usr/bin/jabref install -D -m 00644 $pkgfiles/jabref.desktop -t $installdir/usr/share/applications install -D -m 00644 build/resources/main/icons/jabref.svg -t $installdir/usr/share/icons/hicolor/scalable/apps - install -d -m 00644 $installdir/usr/share/jabref - tar -xf build/distributions/JabRef-*.tar --strip-components=1 -C $installdir/usr/share/jabref + # include script to support browser extensions + install -D -m 00755 buildres/linux/jabrefHost.py -t $installdir/usr/share/jabref/lib/jabreHost.py + + # metainfo was pulled and adapted from flathub + install -D -m 00644 $pkgfiles/org.jabref.jabref.appdata.xml -t $installdir/usr/share/metainfo diff --git a/packages/j/jabref/pspec_x86_64.xml b/packages/j/jabref/pspec_x86_64.xml index ec76ce12371..bbf220d466d 100644 --- a/packages/j/jabref/pspec_x86_64.xml +++ b/packages/j/jabref/pspec_x86_64.xml @@ -1,21 +1,24 @@ jabref + https://jabref.org - Reilly Brogan - solus@reillybrogan.com + CliffordRed Gum + a108384@gmail.com MIT office - Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases - Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases + JabRef Bibliography Management + JabRef is an open-source, cross-platform citation and reference management tool. +JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. - https://getsol.us/sources/README.Solus + https://sources.getsol.us/README.Solus jabref - Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases - Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases + JabRef Bibliography Management + JabRef is an open-source, cross-platform citation and reference management tool. +JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. office @@ -23,137 +26,668 @@ /usr/share/applications/jabref.desktop /usr/share/icons/hicolor/scalable/apps/jabref.svg /usr/share/jabref/bin/JabRef - /usr/share/jabref/bin/JabRef.bat - /usr/share/jabref/lib/FastInfoset-1.2.16.jar - /usr/share/jabref/lib/JabRef-5.5.jar - /usr/share/jabref/lib/JavaEWAH-1.1.13.jar - /usr/share/jabref/lib/afterburner.fx.jar - /usr/share/jabref/lib/animal-sniffer-annotations-1.18.jar - /usr/share/jabref/lib/annotations-15.0.jar - /usr/share/jabref/lib/antlr-runtime-3.5.2.jar - /usr/share/jabref/lib/antlr4-runtime-4.9.3.jar - /usr/share/jabref/lib/appdirs-1.2.1.jar - /usr/share/jabref/lib/applicationinsights-core-2.4.1.jar - /usr/share/jabref/lib/applicationinsights-logging-log4j2-2.4.1.jar - /usr/share/jabref/lib/bcprov-jdk15on-1.70.jar - /usr/share/jabref/lib/checker-qual-3.12.0.jar - /usr/share/jabref/lib/citeproc-java-3.0.0-alpha.3.jar - /usr/share/jabref/lib/commons-cli-1.5.0.jar - /usr/share/jabref/lib/commons-codec-1.11.jar - /usr/share/jabref/lib/commons-csv-1.9.0.jar - /usr/share/jabref/lib/commons-io-2.11.0.jar - /usr/share/jabref/lib/commons-lang3-3.9.jar - /usr/share/jabref/lib/commons-logging-1.2.jar - /usr/share/jabref/lib/commons-text-1.8.jar - /usr/share/jabref/lib/controlsfx-11.1.1.jar + /usr/share/jabref/lib/JMemoryBuddy-0.5.1.jar + /usr/share/jabref/lib/JabRef-5.15.jar + /usr/share/jabref/lib/JavaEWAH-1.2.3.jar + /usr/share/jabref/lib/aalto-xml-1.3.3.jar + /usr/share/jabref/lib/afterburner.fx-2.0.0.jar + /usr/share/jabref/lib/angus-activation-2.0.1.jar + /usr/share/jabref/lib/annotations-24.0.1.jar + /usr/share/jabref/lib/antlr4-runtime-4.13.1.jar + /usr/share/jabref/lib/aopalliance-repackaged-3.1.1.jar + /usr/share/jabref/lib/apiguardian-api-1.1.2.jar + /usr/share/jabref/lib/appdirs-1.2.2.jar + /usr/share/jabref/lib/bcprov-jdk18on-1.78.1.jar + /usr/share/jabref/lib/checker-qual-3.42.0.jar + /usr/share/jabref/lib/citeproc-java-3.1.0.jar + /usr/share/jabref/lib/commons-beanutils-1.9.4.jar + /usr/share/jabref/lib/commons-cli-1.8.0.jar + /usr/share/jabref/lib/commons-codec-1.17.0.jar + /usr/share/jabref/lib/commons-collections-3.2.2.jar + /usr/share/jabref/lib/commons-csv-1.11.0.jar + /usr/share/jabref/lib/commons-digester-2.1.jar + /usr/share/jabref/lib/commons-io-2.16.1.jar + /usr/share/jabref/lib/commons-lang3-3.14.0.jar + /usr/share/jabref/lib/commons-logging-1.3.2.jar + /usr/share/jabref/lib/commons-text-1.12.0.jar + /usr/share/jabref/lib/commons-validator-1.8.0.jar + /usr/share/jabref/lib/controlsfx-11.2.1.jar + /usr/share/jabref/lib/dbus-java-core-4.2.1.jar + /usr/share/jabref/lib/dbus-java-transport-native-unixsocket-4.2.1.jar + /usr/share/jabref/lib/dd-plist-1.28.jar /usr/share/jabref/lib/doc-annotations-0.2.jar - /usr/share/jabref/lib/easybind-2.2.jar - /usr/share/jabref/lib/error_prone_annotations-2.7.1.jar - /usr/share/jabref/lib/failureaccess-1.0.1.jar - /usr/share/jabref/lib/fastparse-1.0.0.jar - /usr/share/jabref/lib/fastparse-utils-1.0.0.jar - /usr/share/jabref/lib/flexmark-0.62.2.jar - /usr/share/jabref/lib/flexmark-ext-gfm-strikethrough-0.62.2.jar - /usr/share/jabref/lib/flexmark-ext-gfm-tasklist-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-ast-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-builder-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-collection-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-data-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-dependency-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-format-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-html-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-misc-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-options-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-sequence-0.62.2.jar - /usr/share/jabref/lib/flexmark-util-visitor-0.62.2.jar - /usr/share/jabref/lib/flowless-0.6.7.jar - /usr/share/jabref/lib/fontbox-2.0.25.jar - /usr/share/jabref/lib/gson-2.8.8.jar - /usr/share/jabref/lib/guava-31.0.1-jre.jar - /usr/share/jabref/lib/h2-mvstore-2.0.206.jar - /usr/share/jabref/lib/httpasyncclient-4.1.5.jar - /usr/share/jabref/lib/httpclient-4.5.13.jar - /usr/share/jabref/lib/httpcore-4.4.13.jar - /usr/share/jabref/lib/httpcore-nio-4.4.13.jar - /usr/share/jabref/lib/httpmime-4.5.13.jar - /usr/share/jabref/lib/ikonli-core-12.3.0.jar - /usr/share/jabref/lib/ikonli-javafx-12.3.0.jar - 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