Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add jigv for pre-computed IGV views in a clean HTML format #1032

Open
chrisamiller opened this issue Jun 8, 2021 · 1 comment
Open

Add jigv for pre-computed IGV views in a clean HTML format #1032

chrisamiller opened this issue Jun 8, 2021 · 1 comment

Comments

@chrisamiller
Copy link
Collaborator

See: https://github.com/brentp/jigv

This tool can generate an html doc with embedded IGV.js views of variants from a given VCF. brentp claims about a 30M file for 900 vars. Would be awesome to get this in the pipeline and spitting out fast IGV views for review of variants. No loading is the killer feature, IMO - data is all pre-populated
@malachig
Copy link
Collaborator

Yeah this sounds awesome.

@chrisamiller chrisamiller mentioned this issue Sep 21, 2021
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@chrisamiller @malachig