Some SynGO evidence codes are no longer children of IDA

[kltm]

In the SynGO data, these evidence codes should be replaced so that they map up to IDA:

• ECO:0000164 electrophysiology assay evidence > should be changed to ECO:0006006 electrophysiology assay evidence used in manual assertion
• ECO:0001120 radioisotope assay evidence > should be changed to ECO:0001254 radioisotope assay evidence used in manual assertion
• ECO:0005593 immunodetection assay evidence > ECO:0007719 immunodetection assay evidence used in manual assertion
• ECO:0006065 in vitro cell based assay evidence used in manual assertion > obsolete, should be replaced by ECO:0007695
  name: cell-based assay evidence used in manual assertion

Tagging @pgaudet @dustine32

[pgaudet]

@ftwkoopmans Can you change the SynGO data as shown in the previous comment and generate a new json file? We could then reload the SynGO data and have everything consistent.

Thanks, Pascale

[dustine32]

Noting that ECO:0006065 is no longer present in the latest JSON file (SynGO_export_2021-02-25.json) so this term's usage appears to already be "fixed" in the upstream. The reason we are currently seeing ECO:0006065 coming out of Noctua is because an older JSON file (SynGO_export_2018-03-17.json) is still loaded into Noctua production.

The other evidence terms ECO:0000164, ECO:0001120, ECO:0005593 are still in the latest (2021-02-25) file and will need to be addressed.

[ftwkoopmans]

I've updated the JSON and uploaded it just now

[dustine32]

Thank you so much @ftwkoopmans!

[kltm]

@dustine32 Sorry to keep bugging you today, but I believe the next steps would be:

• updating the models in syngo-go-cam
• coordinating an "overlay" event during one of the future outages (so we don't get too wonky with master being out of sync)

[kltm]

Pinging @vanaukenk to make sure that the second one there is on our radar.

[dustine32]

@kltm That's correct. I've been meaning to dust off syngo2lego for a long while.

[pgaudet]

• All obsolete evidence codes have been removed, see Determine testing plan for each SynGO load syngo-go-cams#3
• SynGO update planned for the 2022-07-14 Noctua outage, see Outage tasks for 2022-07-14 noctua#782

Can this be closed @kltm ?

[kltm]

@pgaudet Techincally not fixed in production, so moved to clearing until finalized.

[kltm]

release is out.