diff --git a/Makefile b/Makefile index 18007ca..b6881d6 100644 --- a/Makefile +++ b/Makefile @@ -7,7 +7,8 @@ clean: TEST_SRCS ?= sgd pombase #SRCS ?= sgd pombase mgi zfin rgd dictybase fb tair wb goa_human goa_human_complex goa_human_rna goa_human_isoform goa_pig xenbase pseudocap uniprot_reviewed_virus_bacteria -SRCS ?= sgd pombase mgi zfin rgd dictybase fb tair wb goa_human goa_human_complex goa_human_rna goa_human_isoform goa_pig xenbase pseudocap ecocyc +#SRCS ?= sgd pombase mgi zfin rgd dictybase fb tair wb goa_human goa_human_complex goa_human_rna goa_human_isoform goa_pig xenbase pseudocap ecocyc +SRCS ?= uniprot_reviewed OBO_SRCS = $(patsubst %,target/neo-%.obo,$(SRCS)) all_obo: $(OBO_SRCS) @@ -53,6 +54,13 @@ mirror/uniprot_reviewed_virus_bacteria.gpi.gz: target/neo-uniprot_reviewed_virus_bacteria.obo: mirror/uniprot_reviewed_virus_bacteria.gpi.gz gzip -dc $< | ./gpi2obo.pl -F -n reviewed_virus_bacteria > $@.tmp && mv $@.tmp $@ +## In support of including all swissprot reviewed. +## (https://github.com/geneontology/neo/issues/82). +## http://ftp.ebi.ac.uk/pub/contrib/goa/uniprot_reviewed.gpi.gz +mirror/uniprot_reviewed.gpi.gz: + wget --no-check-certificate http://ftp.ebi.ac.uk/pub/contrib/goa/uniprot_reviewed.gpi.gz -O mirror/uniprot_reviewed.gpi.gz +target/neo-uniprot_reviewed.obo: mirror/uniprot_reviewed.gpi.gz + gzip -dc $< | ./gpi2obo.pl -F -n reviewed > $@.tmp && mv $@.tmp $@ # Sub-makefile #