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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.geneontology</groupId>
<version>0.6.2</version>
<artifactId>minerva</artifactId>
<packaging>pom</packaging>
<name>Minerva</name>
<scm>
<url>https://github.com/geneontology/minerva</url>
<connection>scm:git:git://github.com/geneontology/minerva.git</connection>
</scm>
<issueManagement>
<url>https://github.com/geneontology/minerva/issues</url>
</issueManagement>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<owlapi.version>4.5.15</owlapi.version>
<sesame.version>2.7.12</sesame.version> <!-- use same as Blazegraph -->
<jetty.version>9.2.3.v20140905
</jetty.version> <!-- needs to be exactly 9.2.3.v20140905 - older or newer version of jetty will not work with text search api-->
<jersey.version>2.29</jersey.version>
<log4j.version>2.17.1</log4j.version>
</properties>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.2</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.3.0</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.1</version>
<configuration>
<source>8</source>
<additionalparam>-Xdoclint:none</additionalparam>
</configuration>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.8.2</version>
<dependencies>
<dependency>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-ssh</artifactId>
<version>2.8</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.1</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.1.2</version>
<configuration>
<argLine>@{argLine} -Xmx5G</argLine>
</configuration>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.4</version>
<executions>
<execution>
<id>jacoco-initialize</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>jacoco-site</id>
<phase>package</phase>
<goals>
<goal>report</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>3.6.0</version>
</plugin>
</plugins>
</pluginManagement>
</build>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
</dependencies>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>2.8.9</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-io</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-jmx</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-jndi</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-rewrite</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-xml</artifactId>
<version>${jetty.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.containers</groupId>
<artifactId>jersey-container-servlet-core</artifactId>
<version>${jersey.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-common</artifactId>
<version>${jersey.version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.inject</groupId>
<artifactId>jersey-hk2</artifactId>
<version>${jersey.version}</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.5.14</version>
</dependency>
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>${owlapi.version}</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.2</version>
</dependency>
<dependency>
<groupId>com.blazegraph</groupId>
<artifactId>bigdata-core</artifactId>
<version>2.1.4</version>
<exclusions>
<exclusion>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- 2.1.5-wmf.6 -->
<!-- Blazegraph 2.1.4 requires this exact version of Sesame (2.7.12) -->
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-model</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-runtime</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-api</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-languages</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-datatypes</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-binary</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-n3</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-nquads</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-ntriples</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-rdfjson</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-rdfxml</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-trix</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-turtle</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>org.openrdf.sesame</groupId>
<artifactId>sesame-rio-trig</artifactId>
<version>${sesame.version}</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.7</version>
</dependency>
<dependency>
<groupId>org.geneontology</groupId>
<artifactId>owl-to-rules_2.12</artifactId>
<version>0.3.8</version>
<exclusions>
<exclusion>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.geneontology</groupId>
<artifactId>arachne_2.12</artifactId>
<version>1.2</version>
<exclusions>
<exclusion>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.jena</groupId>
<artifactId>apache-jena-libs</artifactId>
<version>3.12.0</version>
<type>pom</type>
</dependency>
<dependency>
<groupId>net.sf.trove4j</groupId>
<artifactId>trove4j</artifactId>
<version>3.0.3</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j</artifactId>
<version>${log4j.version}</version>
<type>pom</type>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-1.2-api</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.obolibrary.robot</groupId>
<artifactId>robot-core</artifactId>
<version>1.7.1</version>
<exclusions>
<exclusion>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
</dependencyManagement>
<distributionManagement>
<repository>
<id>BBOPDeployRepository</id>
<name>BBOPDeployRepository</name>
<url>${bbopdeployrepository}</url>
</repository>
<snapshotRepository>
<id>BBOPSnapshotRepository</id>
<name>BBOPSnapshotRepository</name>
<url>${bbopsnapshotrepository}</url>
</snapshotRepository>
</distributionManagement>
<modules>
<module>minerva-core</module>
<module>minerva-json</module>
<module>minerva-server</module>
<module>minerva-converter</module>
<module>minerva-cli</module>
<module>minerva-lookup</module>
</modules>
</project>