diff --git a/metadata/rules/README.md b/metadata/rules/README.md index d4b8f983..b0207bb1 100644 --- a/metadata/rules/README.md +++ b/metadata/rules/README.md @@ -493,11 +493,14 @@ reasoner such as HermiT. * status: implemented -There should be no annotations to obsolete terms or to an alternate ID. Obsolete terms that have a `replaced_by` tag and -terms annotated to one of their alternative IDs (merged terms; `alt_id` in the .obo files) will automatically be repaired to the valid term id. +There should be no annotations to obsolete terms or to an alternate ID (Column 5 of GAF, Column 4 of GPAD). As well, GO terms present in annotations also should be repaired if possible: +* with/from: Column 8 of GAF, Column 7 of GPAD +* extensions, Column 16 of GAF, Column 11 of GPAD + +Obsolete terms that have a `replaced_by` tag and terms annotated to one of their alternative IDs (merged terms; `alt_id` in the .obo files) will automatically be repaired to the valid term id. If no replacement is found, the annotation will be filtered. -Other GO terms present in annotations (with/from column, etc) also should be repaired if possible. +