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[quick] Add grebe template: compare two gene sets for two terms #604

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cmungall opened this issue Oct 30, 2020 · 1 comment
Open

[quick] Add grebe template: compare two gene sets for two terms #604

cmungall opened this issue Oct 30, 2020 · 1 comment

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@cmungall
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Example driver: geneontology/go-ontology#20250

I'd like to compare two gene sets

  • all genes directly annotated to T1
  • all genes directly annotated to T2

Ideally I'd like 4 results - intersection, g(T1)-g(T2), g(T2)-g(T1), but this is harder to fit into the template system. But just getting genes in T1 but not T2 would be great. This is a simple boolean.

However, I think a template:

  • T1: term1
  • T2: term2
  • S: species

And that returns all results from bioentity query with closure to T1 but not closure to T2

kltm added a commit that referenced this issue Oct 30, 2020
@kltm
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kltm commented Oct 30, 2020

I think I get what you're getting at... this #605?

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