Visualisation and post-onset outcome functionality

[adamkucharski]

It could be helpful for users to be able to visualise the simulated transmission chains against onset timeseries, much like Fig 1 here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696719/

Another addition that could be useful is to have the ability to output simulated outcomes (e.g. hospitalisations/deaths) based on the simulated onset times, perhaps using delay distributions in epiparameter along with specification of IFR/IHR etc. Although this may be beyond scope of this package and functions better placed in a specific 'burden generation' package?

[jamesmbaazam]

First part of this issue is related to #11 and will be addressed as a new feature before CRAN submission.

[joshwlambert]

As @jamesmbaazam pointed out in the {simulist} discussion board part of this issue is be achieved by the {simulist} package. @adamkucharski and @jamesmbaazam could you take a look at the current version of {simulist} and let me know if it covers the required functionality to close this issue?