From 8325ebba1b5dffc3563f807544d81f2f0d04c293 Mon Sep 17 00:00:00 2001 From: Tuo Zhang Date: Fri, 20 Dec 2019 16:33:59 -0500 Subject: [PATCH] add links for database --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 701c0a5..b2e421f 100644 --- a/README.md +++ b/README.md @@ -15,9 +15,9 @@ DGVar was developed and tested on linux system. To run DGVar, you'll need a linu ## Pre-compiled database The following databases are required: -- Human GRCh37 reference genome -- NCBI dbSNP v137 -- snpEff database GRCh37.75 +- Human GRCh37 reference genome (b37, available on GATK resource [bundle](https://software.broadinstitute.org/gatk/download/bundle)) +- NCBI dbSNP v137 (available on GATK resource [bundle](https://software.broadinstitute.org/gatk/download/bundle)) +- SnpEff database GRCh37.75 (available on [SnpEff](http://snpeff.sourceforge.net/download.html#databases)) - NCBI ClinVar v20180805 (slim version available on [Box](https://wcm.box.com/s/nzzhudb6371cwuv1w2omtp84ripsfnsr)) - ExAC v0.3.1 (slim version available on [Box](https://wcm.box.com/s/8t01e5eb3vf3f1idpg7zwq71ypos8qgz)) - Exome target regions (Agilent HaloPlex bed file available on [Box](https://wcm.box.com/s/4bkw0f2rn858re30hq85lwgxxk33mes3))