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Nanostring GeoMx #73

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RM83 opened this issue May 26, 2023 · 1 comment
Open

Nanostring GeoMx #73

RM83 opened this issue May 26, 2023 · 1 comment

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@RM83
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RM83 commented May 26, 2023

Hi,
I saw that xCell is intended for bulk gene expression. Is xCell suitable for Nanostring GeoMx data to predict cell type enrichment?

Thank you.
@dviraran
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Hi,

Probably not since it GeoMx only provides a measurement for a small number of genes, and the current version of xCell can't be trained for a specific data type.

Best,
Dvir

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@dviraran @RM83