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Not sure if rsem is using --num-threads option... #217

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siyer-broad opened this issue Jun 25, 2024 · 0 comments
Open

Not sure if rsem is using --num-threads option... #217

siyer-broad opened this issue Jun 25, 2024 · 0 comments

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@siyer-broad
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Hello,

I am running rsem-calculate-expression on a 20-vCPU, 200G RAM google VM instance for processing a STAR output Aligned.toTranscriptome.out.bam file with approximately 100 million reads. It takes approximately an 1-1.25 hours.

Is this expected? Is there a way to check the trace if the EM algorithm is using all cores?
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