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run_sample_type_predictor import is wrong #277

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dmalzl opened this issue Nov 25, 2023 · 0 comments
Open

run_sample_type_predictor import is wrong #277

dmalzl opened this issue Nov 25, 2023 · 0 comments

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@dmalzl
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dmalzl commented Nov 25, 2023

When running the run_pipeline.py script I get an import error when it is trying to import run_sample_type_predictor. This import is written as

from predict_sample_type import run_sample_type_predictor

when really this module is part of the map_sra_to_ontology module and the import should read

from map_sra_to_ontology import run_sample_type_predictor

rewriting the first to the second fixes the import error and the pipeline runs without problem. Of course given #276 was fixed before
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@dmalzl