build_test_and_push.yml

name: build_test_and_push

on:
  release:
    types: [released]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.10', '3.11']

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install and configure conda
      run: |
        wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
        bash miniconda.sh -b -p $HOME/miniconda
        export PATH="$HOME/miniconda/bin:$PATH"
        hash -r
        conda config --set always_yes yes --set changeps1 no
        conda update -q conda
        conda info -a
        conda create -q -n test-environment python=${{ matrix.python-version }} numpy scipy numba pandas matplotlib
        source activate test-environment
    - name: Run setup.py
      run: |
        python setup.py sdist --formats=zip -k
        python setup.py bdist_wheel
        find ./dist -iname "*.zip" -print0 | xargs -0 pip install
        pip install codecov
    - name: Download test files
      run: |
        wget https://marks.hms.harvard.edu/evcouplings_test_cases/data/evcouplings_test_cases.tar.gz
        tar -xf evcouplings_test_cases.tar.gz -C $HOME/
    - name: Run tests in headless xvfb environment
      uses: coactions/setup-xvfb@v1
      with:
        run: coverage run -m unittest discover -s test -p "Test*.py"
        working-directory: ./ #optional
    - name: Publish evcouplings to test PyPI
      if: startsWith(github.ref, 'refs/tags')
      uses: pypa/gh-action-pypi-publish@master
      with:
        password: ${{ secrets.PYPI_ACCESS_TOKEN_TEST }}
        repository_url: https://test.pypi.org/legacy/
    - name: Publish evcouplings to PyPI
      if: startsWith(github.ref, 'refs/tags')
      uses: pypa/gh-action-pypi-publish@master
      with:
        password: ${{ secrets.PYPI_ACCESS_TOKEN }}