diff --git a/DESCRIPTION b/DESCRIPTION
index 6c2100a..3d6e1a3 100755
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,43 +1,44 @@
-Type: Package
-Package: BioGA
-Title: Bioinformatics Genetic Algorithm (BioGA)
-Version: 0.99.6
-Authors@R:
- person("Dany", "Mukesha", , "danymukesha@gmail.com",
- role = c("aut", "cre"),
- comment = c(ORCID = "0009-0001-9514-751X"))
-Description: Genetic algorithm are a class of optimization algorithms
- inspired by the process of natural selection and genetics. This
- package allows users to analyze and optimize high throughput genomic
- data using genetic algorithms. The functions provided are implemented
- in C++ for improved speed and efficiency, with an easy-to-use
- interface for use within R.
-License: MIT + file LICENSE
-URL: https://danymukesha.github.io/BioGA/
-BugReports: https://github.com/danymukesha/BioGA/issues
-Imports:
- ggplot2,
- graphics,
- Rcpp,
- SummarizedExperiment,
- animation,
- rlang,
- biocViews,
- sessioninfo,
- BiocStyle
-Depends:
- R (>= 4.4)
-Suggests:
- knitr,
- rmarkdown,
- testthat (>= 3.0.0)
-LinkingTo:
- Rcpp
-VignetteBuilder:
- knitr
-biocViews: ExperimentalDesign, Technology
-Encoding: UTF-8
-LazyData: false
-Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
-Config/testthat/edition: 3
+Type: Package
+Package: BioGA
+Title: Bioinformatics Genetic Algorithm (BioGA)
+Version: 0.99.6
+Authors@R:
+ person("Dany", "Mukesha", , "danymukesha@gmail.com",
+ role = c("aut", "cre"),
+ comment = c(ORCID = "0009-0001-9514-751X"))
+Description: Genetic algorithm are a class of optimization algorithms
+ inspired by the process of natural selection and genetics. This
+ package allows users to analyze and optimize high throughput genomic
+ data using genetic algorithms. The functions provided are implemented
+ in C++ for improved speed and efficiency, with an easy-to-use
+ interface for use within R.
+License: MIT + file LICENSE
+URL: https://danymukesha.github.io/BioGA/,
+ https://bioconductor.org/packages/BioGA/
+BugReports: https://github.com/danymukesha/BioGA/issues
+Imports:
+ ggplot2,
+ graphics,
+ Rcpp,
+ SummarizedExperiment,
+ animation,
+ rlang,
+ biocViews,
+ sessioninfo,
+ BiocStyle
+Depends:
+ R (>= 4.4)
+Suggests:
+ knitr,
+ rmarkdown,
+ testthat (>= 3.0.0)
+LinkingTo:
+ Rcpp
+VignetteBuilder:
+ knitr
+biocViews: ExperimentalDesign, Technology
+Encoding: UTF-8
+LazyData: false
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.3.2
+Config/testthat/edition: 3
diff --git a/README.Rmd b/README.Rmd
index 2221ed3..1d53847 100755
--- a/README.Rmd
+++ b/README.Rmd
@@ -15,6 +15,7 @@ knitr::opts_chunk$set(
[![R-CMD-check](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml)
+ [![](https://img.shields.io/badge/devel%20version-0.99.6-blue.svg)](https://github.com/danymukesha/BioGA)
# BioGA
@@ -28,7 +29,7 @@ with an easy-to-use interface for use within R.
You can install the package directly from GitHub using the `devtools` package:
-```{r}
+```{r eval=FALSE}
devtools::install_github("danymukesha/BioGA")
```
diff --git a/README.html b/README.html
new file mode 100755
index 0000000..6376806
--- /dev/null
+++ b/README.html
@@ -0,0 +1,623 @@
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+BioGA
+
+The BioGA
package provides a set of functions for
+genetic algorithm optimization tailored for analyzing high throughput
+genomic data. These functions are implemented in C++ for improved speed
+and efficiency, with an easy-to-use interface for use within R.
+Installation
+You can install the package directly from GitHub using the
+devtools
package:
+devtools::install_github("danymukesha/BioGA")
+
+
+
diff --git a/README.md b/README.md
index 851e0e6..3bf6dcb 100644
--- a/README.md
+++ b/README.md
@@ -3,6 +3,7 @@
[![R-CMD-check](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml)
+[![](https://img.shields.io/badge/devel%20version-0.99.6-blue.svg)](https://github.com/danymukesha/BioGA)
# BioGA
@@ -19,63 +20,4 @@ package:
``` r
devtools::install_github("danymukesha/BioGA")
-#> Downloading GitHub repo danymukesha/BioGA@HEAD
-#> fs (1.6.3 -> 1.6.4 ) [CRAN]
-#> fastmap (1.1.1 -> 1.2.0 ) [CRAN]
-#> cachem (1.0.8 -> 1.1.0 ) [CRAN]
-#> xfun (0.42 -> 0.44 ) [CRAN]
-#> tinytex (0.50 -> 0.51 ) [CRAN]
-#> knitr (1.45 -> 1.46 ) [CRAN]
-#> htmltools (0.5.7 -> 0.5.8.1) [CRAN]
-#> bslib (0.6.1 -> 0.7.0 ) [CRAN]
-#> rmarkdown (2.26 -> 2.27 ) [CRAN]
-#> matrixStats (1.2.0 -> 1.3.0 ) [CRAN]
-#> munsell (0.5.0 -> 0.5.1 ) [CRAN]
-#> farver (2.1.1 -> 2.1.2 ) [CRAN]
-#> BiocManager (1.30.22 -> 1.30.23) [CRAN]
-#> bookdown (0.38 -> 0.39 ) [CRAN]
-#> gtable (0.3.4 -> 0.3.5 ) [CRAN]
-#> ggplot2 (3.5.0 -> 3.5.1 ) [CRAN]
-#> Skipping 17 packages ahead of CRAN: BiocGenerics, graph, S4Arrays, IRanges, S4Vectors, MatrixGenerics, GenomeInfoDbData, zlibbioc, XVector, GenomeInfoDb, RBGL, Biobase, DelayedArray, GenomicRanges, BiocStyle, biocViews, SummarizedExperiment
-#> Installing 16 packages: fs, fastmap, cachem, xfun, tinytex, knitr, htmltools, bslib, rmarkdown, matrixStats, munsell, farver, BiocManager, bookdown, gtable, ggplot2
-#> Installing packages into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp_libpath848868d23488'
-#> (as 'lib' is unspecified)
-#> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:
-#> cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3/PACKAGES'
-#> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:
-#> cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3/PACKAGES'
-#> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:
-#> cannot open URL 'https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3/PACKAGES'
-#> package 'fs' successfully unpacked and MD5 sums checked
-#> package 'fastmap' successfully unpacked and MD5 sums checked
-#> package 'cachem' successfully unpacked and MD5 sums checked
-#> package 'xfun' successfully unpacked and MD5 sums checked
-#> package 'tinytex' successfully unpacked and MD5 sums checked
-#> package 'knitr' successfully unpacked and MD5 sums checked
-#> package 'htmltools' successfully unpacked and MD5 sums checked
-#> package 'bslib' successfully unpacked and MD5 sums checked
-#> package 'rmarkdown' successfully unpacked and MD5 sums checked
-#> package 'matrixStats' successfully unpacked and MD5 sums checked
-#> package 'munsell' successfully unpacked and MD5 sums checked
-#> package 'farver' successfully unpacked and MD5 sums checked
-#> package 'BiocManager' successfully unpacked and MD5 sums checked
-#> package 'bookdown' successfully unpacked and MD5 sums checked
-#> package 'gtable' successfully unpacked and MD5 sums checked
-#> package 'ggplot2' successfully unpacked and MD5 sums checked
-#>
-#> The downloaded binary packages are in
-#> C:\Users\dany.mukesha\AppData\Local\Temp\RtmpArcJMj\downloaded_packages
-#> ── R CMD build ─────────────────────────────────────────────────────────────────
-#> checking for file 'C:\Users\dany.mukesha\AppData\Local\Temp\RtmpArcJMj\remotes15e82c92423\danymukesha-BioGA-23ecb91/DESCRIPTION' ... ✔ checking for file 'C:\Users\dany.mukesha\AppData\Local\Temp\RtmpArcJMj\remotes15e82c92423\danymukesha-BioGA-23ecb91/DESCRIPTION' (343ms)
-#> ─ preparing 'BioGA':
-#> checking DESCRIPTION meta-information ... checking DESCRIPTION meta-information ... ✔ checking DESCRIPTION meta-information
-#> ─ cleaning src
-#> ─ checking for LF line-endings in source and make files and shell scripts
-#> ─ checking for empty or unneeded directories
-#> Omitted 'LazyData' from DESCRIPTION
-#> ─ building 'BioGA_0.99.5.tar.gz'
-#>
-#>
-#> Installing package into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp_libpath848868d23488'
-#> (as 'lib' is unspecified)
```