diff --git a/docs/articles/Overview.html b/docs/articles/Overview.html index 1d3a4eb..3e42654 100644 --- a/docs/articles/Overview.html +++ b/docs/articles/Overview.html @@ -194,11 +194,11 @@ format(elapsed_time, units = "secs"), " ") } #> -Generation: 1 - Elapsed Time: 0.004971027 secs -Generation: 2 - Elapsed Time: 0.005535126 secs -Generation: 3 - Elapsed Time: 0.005612135 secs -Generation: 4 - Elapsed Time: 0.005671978 secs -Generation: 5 - Elapsed Time: 0.00572896 secs +Generation: 1 - Elapsed Time: 0.005192995 secs +Generation: 2 - Elapsed Time: 0.005790949 secs +Generation: 3 - Elapsed Time: 0.005857944 secs +Generation: 4 - Elapsed Time: 0.00590992 secs +Generation: 5 - Elapsed Time: 0.005956888 secs

The fitness calculation described in the provided code calculates a measure of dissimilarity between the gene expression profiles of individuals in the population and the genomic data. This measure of diff --git a/docs/articles/Overview_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/Overview_files/figure-html/unnamed-chunk-5-1.png index 725a54a..33458c8 100644 Binary files a/docs/articles/Overview_files/figure-html/unnamed-chunk-5-1.png and b/docs/articles/Overview_files/figure-html/unnamed-chunk-5-1.png differ diff --git a/docs/articles/Usage.html b/docs/articles/Usage.html index 94dcdaa..cc9df2b 100644 --- a/docs/articles/Usage.html +++ b/docs/articles/Usage.html @@ -150,11 +150,11 @@

Chapter 2: Genetic Algorithm O format(elapsed_time, units = "secs"), " ") } #> -Generation: 1 - Elapsed Time: 0.04466105 secs -Generation: 2 - Elapsed Time: 0.04523516 secs -Generation: 3 - Elapsed Time: 0.04532003 secs -Generation: 4 - Elapsed Time: 0.04538321 secs -Generation: 5 - Elapsed Time: 0.045439 secs +Generation: 1 - Elapsed Time: 0.04440284 secs +Generation: 2 - Elapsed Time: 0.04494095 secs +Generation: 3 - Elapsed Time: 0.0450089 secs +Generation: 4 - Elapsed Time: 0.04505897 secs +Generation: 5 - Elapsed Time: 0.04510403 secs

Chapter 3: Results Visualization diff --git a/docs/articles/Usage_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/Usage_files/figure-html/unnamed-chunk-4-1.png index c9cd8ee..d643004 100644 Binary files a/docs/articles/Usage_files/figure-html/unnamed-chunk-4-1.png and b/docs/articles/Usage_files/figure-html/unnamed-chunk-4-1.png differ diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index acb5b0c..925d999 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -5,7 +5,7 @@ articles: Introduction: Introduction.html Overview: Overview.html Usage: Usage.html -last_built: 2024-02-26T17:44Z +last_built: 2024-02-26T18:23Z urls: reference: https://danymukesha.github.io/BioGA/reference article: https://danymukesha.github.io/BioGA/articles diff --git a/docs/reference/crossover_cpp.html b/docs/reference/crossover_cpp.html index 5092447..8d05576 100644 --- a/docs/reference/crossover_cpp.html +++ b/docs/reference/crossover_cpp.html @@ -90,12 +90,12 @@

Examplesselected_parents <- BioGA::selection_cpp(population, fitness, num_parents = 2) BioGA::crossover_cpp(selected_parents, offspring_size = 2) -#> [,1] [,2] [,3] [,4] [,5] [,6] -#> [1,] 1.0743459 -0.243236740 0.7487913 -1.6309894 0.4861489 -0.0974451 -#> [2,] -0.1628488 0.006040158 0.7487913 -0.6971466 0.5538508 0.2132323 -#> [,7] [,8] [,9] [,10] -#> [1,] 0.04653138 -0.1099357 -0.24419961 -0.2966400 -#> [2,] -1.11379174 -0.1099357 -0.03600895 -0.1934837 +#> [,1] [,2] [,3] [,4] [,5] [,6] [,7] +#> [1,] 0.6797754 -0.190469 0.4993739 -0.009462651 -0.8629103 1.110535 -0.3543612 +#> [2,] 0.6797754 -0.190469 0.4993739 -0.009462651 -0.8629103 1.110535 -0.3543612 +#> [,8] [,9] [,10] +#> [1,] -0.1041478 1.316826 -0.8491824 +#> [2,] -0.1041478 1.316826 -0.8491824