From 712a2eed1b9c35adeb8a49674d4b45d2b29ddb45 Mon Sep 17 00:00:00 2001 From: marcobarilari <38101692+marcobarilari@users.noreply.github.com> Date: Mon, 24 Jun 2024 13:34:30 +0200 Subject: [PATCH] change lemaitre3 to lemaitre4 --- doc/cpp_fmriprep.slurm | 2 +- doc/cpp_mriqc.slurm | 2 +- doc/cpp_mriqc_group.slurm | 2 +- doc/install_datalad.md | 2 +- doc/overview.md | 6 +++++- doc/run_fmriprep.md | 4 ++-- doc/run_mriqc.md | 6 +++--- 7 files changed, 14 insertions(+), 10 deletions(-) diff --git a/doc/cpp_fmriprep.slurm b/doc/cpp_fmriprep.slurm index 4b279e4..78e4938 100644 --- a/doc/cpp_fmriprep.slurm +++ b/doc/cpp_fmriprep.slurm @@ -21,7 +21,7 @@ # # writtent by CPP people # -# Submission command for Lemaitre3 +# Submission command for Lemaitre4 # # sbatch cpp_fmriprep.slurm # diff --git a/doc/cpp_mriqc.slurm b/doc/cpp_mriqc.slurm index 155295b..3138b29 100644 --- a/doc/cpp_mriqc.slurm +++ b/doc/cpp_mriqc.slurm @@ -21,7 +21,7 @@ # # writtent by CPP people # -# Submission command for Lemaitre3 +# Submission command for Lemaitre4 # # sbatch cpp_mriqc.slurm # diff --git a/doc/cpp_mriqc_group.slurm b/doc/cpp_mriqc_group.slurm index 5514118..949fcb9 100644 --- a/doc/cpp_mriqc_group.slurm +++ b/doc/cpp_mriqc_group.slurm @@ -21,7 +21,7 @@ # # writtent by CPP people # -# Submission command for Lemaitre3 after running mriqc for each participant +# Submission command for Lemaitre4 after running mriqc for each participant # # sbatch cpp_mriqc_group.slurm diff --git a/doc/install_datalad.md b/doc/install_datalad.md index f67e5c5..5e2afaa 100644 --- a/doc/install_datalad.md +++ b/doc/install_datalad.md @@ -2,7 +2,7 @@ To contribute see [here](https://cpp-lln-lab.github.io/CPP_HPC/contributing/) -- First of all access one the clusters (this has been tried on _Lemaitre3_) +- First of all access one the clusters (this has been tried on _Lemaitre4_) - Upgrade `pip`. ```bash diff --git a/doc/overview.md b/doc/overview.md index a0d1ab1..2d8c93c 100644 --- a/doc/overview.md +++ b/doc/overview.md @@ -71,7 +71,11 @@ to choose the cluster that best meets your necessities) ThrFor example two clusters with different characteristics (part of the CECI cluster): -##### Lemaitre3 +##### Lemaitre3 + +!!! Warning + + SHUTDOWN FORM JULY 1ST 2024 AND REPLACED BY LEMAITRE4 !!!!! - Louvain-la-Neuve - Nodes 96 GB RAM diff --git a/doc/run_fmriprep.md b/doc/run_fmriprep.md index 49e599c..bc9f723 100644 --- a/doc/run_fmriprep.md +++ b/doc/run_fmriprep.md @@ -38,7 +38,7 @@ cd path/to/containers datald update --merge `````` -Depending on the cluster “unlock” is needed or not. No need for `lemaitre3`. +Depending on the cluster “unlock” is needed or not. No need for `lemaitre3`. !!! TO CHECK ON LEMAITRE4 ```bash datalad unlock containers/images/bids/bids-fmriprep--21.0.1.sing @@ -70,7 +70,7 @@ Content of the `cpp_fmriprep.slurm` file (download and edit from [here](cpp_fmri On the cluster prompt, submit the jobs as: ```bash -# Submission command for Lemaitre3 +# Submission command for Lemaitre4 # USAGE on cluster: diff --git a/doc/run_mriqc.md b/doc/run_mriqc.md index 617093e..40738b6 100644 --- a/doc/run_mriqc.md +++ b/doc/run_mriqc.md @@ -43,7 +43,7 @@ cd path/to/containers datald update --merge `````` -Depending on the cluster “unlock” is needed or not. No need for `lemaitre3`. +Depending on the cluster “unlock” is needed or not. No need for `lemaitre3`. !! TO CHECK ON LEMAITRE4 ```bash datalad unlock containers/images/bids/bids-mriqc--23.1.0.sing @@ -75,7 +75,7 @@ Content of the `cpp_mriqc.slurm` file (download and edit from [here](cpp_mriqc.s On the cluster prompt, submit the jobs as: ```bash -# Submission command for Lemaitre3 +# Submission command for Lemaitre4 # USAGE on cluster: @@ -109,7 +109,7 @@ Content of the `cpp_mriqc_group.slurm` file (download and edit from [here](cpp_m On the cluster prompt, submit the jobs as: ```bash -# Submission command for Lemaitre3 +# Submission command for Lemaitre4 # USAGE on cluster: