diff --git a/native/cocos/core/assets/EffectAsset.cpp b/native/cocos/core/assets/EffectAsset.cpp
index da675688ea5..3de9bb7c778 100644
--- a/native/cocos/core/assets/EffectAsset.cpp
+++ b/native/cocos/core/assets/EffectAsset.cpp
@@ -226,9 +226,16 @@ void EffectAsset::precompile() {
             continue;
         }
 
-        ccstd::vector<MacroRecord> defines = EffectAsset::doCombine(ccstd::vector<MacroRecord>(), combination, combination.begin());
-        for (auto &define : defines) {
-            ProgramLib::getInstance()->getGFXShader(root->getDevice(), shader.name, define, root->getPipeline());
+        // Native Program Lib can not precompile shader variant without phaseID.
+        // Shaders are compiled only during the compilation of PSO. A new mechanism may be needed for pre-compilation.
+        auto *programLib = render::getProgramLibrary();
+        if (programLib == nullptr) {
+            ccstd::vector<MacroRecord> defines = EffectAsset::doCombine(
+                ccstd::vector<MacroRecord>(), combination, combination.begin());
+            for (auto &define: defines) {
+                ProgramLib::getInstance()->getGFXShader(root->getDevice(), shader.name, define,
+                                                        root->getPipeline());
+            }
         }
     }
 }
diff --git a/native/cocos/renderer/gfx-gles3/GLES3Commands.cpp b/native/cocos/renderer/gfx-gles3/GLES3Commands.cpp
index afddfc2d1a7..ef6b638d93e 100644
--- a/native/cocos/renderer/gfx-gles3/GLES3Commands.cpp
+++ b/native/cocos/renderer/gfx-gles3/GLES3Commands.cpp
@@ -1583,7 +1583,12 @@ void cmdFuncGLES3CreateFramebuffer(GLES3Device *device, GLES3GPUFramebuffer *gpu
             if (lazilyAllocated &&                               // MS attachment should be memoryless
                 resolveView->gpuTexture->swapchain == nullptr && // not back buffer
                 i < supportCount) {                              // extension limit
-                gpuFBO->framebuffer.bindColorMultiSample(resolveView, colorIndex, view->gpuTexture->glSamples, resolveDesc);
+                auto validateDesc = resolveDesc;
+                // implicit MS take color slot, so color loadOP should be used.
+                // resolve attachment with Store::Discard is meaningless.
+                validateDesc.loadOp = desc.loadOp;
+                validateDesc.storeOp = StoreOp::STORE;
+                gpuFBO->framebuffer.bindColorMultiSample(resolveView, colorIndex, view->gpuTexture->glSamples, validateDesc);
             } else {
                 // implicit MS not supported, fallback to MS Renderbuffer
                 gpuFBO->colorBlitPairs.emplace_back(colorIndex, resolveColorIndex);
@@ -1609,7 +1614,14 @@ void cmdFuncGLES3CreateFramebuffer(GLES3Device *device, GLES3GPUFramebuffer *gpu
                 resolveView->gpuTexture->swapchain == nullptr && // not back buffer
                 supportCount > 1 &&                              // extension limit
                 useDsResolve) {                                  // enable ds resolve
-                gpuFBO->framebuffer.bindDepthStencilMultiSample(resolveView, view->gpuTexture->glSamples, resolveDesc);
+                auto validateDesc = resolveDesc;
+                // implicit MS take ds slot, so ds MS loadOP should be used.
+                // resolve attachment with Store::Discard is meaningless.
+                validateDesc.depthLoadOp = desc.depthLoadOp;
+                validateDesc.depthStoreOp = StoreOp::STORE;
+                validateDesc.stencilLoadOp = desc.stencilLoadOp;
+                validateDesc.stencilStoreOp = StoreOp::STORE;
+                gpuFBO->framebuffer.bindDepthStencilMultiSample(resolveView, view->gpuTexture->glSamples, validateDesc);
             } else {
                 // implicit MS not supported, fallback to MS Renderbuffer
                 gpuFBO->dsResolveMask = getColorBufferMask(desc.format);
diff --git a/native/cocos/renderer/pipeline/custom/NativeExecutor.cpp b/native/cocos/renderer/pipeline/custom/NativeExecutor.cpp
index 23fdda466bc..9c6c4f2a7ae 100644
--- a/native/cocos/renderer/pipeline/custom/NativeExecutor.cpp
+++ b/native/cocos/renderer/pipeline/custom/NativeExecutor.cpp
@@ -232,7 +232,8 @@ PersistentRenderPassAndFramebuffer createPersistentRenderPassAndFramebuffer(
                     [&](const IntrusivePtr<gfx::Framebuffer>& fb) {
                         CC_EXPECTS(fb->getColorTextures().size() == 1);
                         CC_EXPECTS(fb->getColorTextures().at(0));
-                        fbInfo.colorTextures.emplace_back(fb->getColorTextures()[index]);
+                        // usually gfx::Framebuffer comes form RenderWindow, and use as color or resolve attachment.
+                        fbInfo.colorTextures.emplace_back(fb->getColorTextures()[0]);
                         // render window attaches a depthStencil by default, which may differs from renderpassInfo here.
                         // data.framebuffer = fb;
                     },