From 0009f1540c4fa341594a87e1ceaddb27df0eb873 Mon Sep 17 00:00:00 2001
From: jo-mueller <jo-mueller@users.noreply.github.com>
Date: Thu, 5 Oct 2023 09:09:42 +0000
Subject: [PATCH] deploy: f677c6d901bceebd463f833c761aa231b9bddc97

---
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 .../01_toolboxes/demo_analyze_everything.html |   1 -
 .../demo_anisotropic_stresses.html            |   1 -
 ...o_droplet_reconstruction_toolbox_code.html |   1 -
 .../02_example_workflows/Readme.html          |   1 -
 .../demo_fit_ellipsoid_code.html              |   1 -
 .../demo_measure_intensity_on_surface.html    |   1 -
 .../demo_measure_intensity_on_vectors.html    |   1 -
 .../demo_spherical_harmonics_code.html        |   1 -
 .../demo_surface_reconstruction_code.html     |   1 -
 .../demo_surface_tracing.html                 |   1 -
 .../demo_timelapse_processing.html            |   1 -
 01_code_usage/code_usage.html                 |   1 -
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 .../02_validation/create_validation_data.html |   1 -
 04_FAQ/Acknowledgement_and_citation.html      |   1 -
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 ...ri_stress.approximation.fit_ellipsoid.html |   1 -
 .../napari_stress.approximation.html          |   1 -
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 ...tress.measurements.deviation_analysis.html |   1 -
 .../napari_stress.measurements.geodesics.html |   1 -
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 ...pari_stress.measurements.measurements.html |   1 -
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 06_API/api.html                               |   1 -
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 genindex.html                                 |  14 +-
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 objects.inv                                   | Bin 2153 -> 2132 bytes
 py-modindex.html                              |   6 -
 search.html                                   |   1 -
 searchindex.js                                |   2 +-
 .../demo_register_napari_stress_types.html    |   1 -
 58 files changed, 16 insertions(+), 628 deletions(-)
 delete mode 100644 06_API/_autosummary/napari_stress.measurements.utils.html
 delete mode 100644 _sources/06_API/_autosummary/napari_stress.measurements.utils.rst

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diff --git a/06_API/_autosummary/napari_stress.approximation.html b/06_API/_autosummary/napari_stress.approximation.html
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diff --git a/06_API/_autosummary/napari_stress.measurements.deviation_analysis.html b/06_API/_autosummary/napari_stress.measurements.deviation_analysis.html
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diff --git a/06_API/_autosummary/napari_stress.measurements.geodesics.html b/06_API/_autosummary/napari_stress.measurements.geodesics.html
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diff --git a/06_API/_autosummary/napari_stress.measurements.html b/06_API/_autosummary/napari_stress.measurements.html
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@@ -420,9 +419,6 @@ <h1>napari_stress.measurements</h1>
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diff --git a/06_API/_autosummary/napari_stress.measurements.intensity.html b/06_API/_autosummary/napari_stress.measurements.intensity.html
index a8021830..90c6c8ef 100644
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diff --git a/06_API/_autosummary/napari_stress.measurements.measurements.html b/06_API/_autosummary/napari_stress.measurements.measurements.html
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diff --git a/06_API/_autosummary/napari_stress.measurements.stresses.html b/06_API/_autosummary/napari_stress.measurements.stresses.html
index c2d70db4..3e64af38 100644
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@@ -399,10 +398,13 @@ <h1>napari_stress.measurements.stresses</h1>
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 <td><p>Calculate anisotropic stress from mean and averaged curvatures.</p></td>
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-<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">maximal_tissue_anisotropy</span></code>(ellipsoid[, gamma])</p></td>
+<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">calculate_anisotropy</span></code>(df, column[, alpha, ...])</p></td>
+<td><p>Calculate anisotropy of a column in a dataframe.</p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">maximal_tissue_anisotropy</span></code>(ellipsoid[, gamma])</p></td>
 <td><p>Calculate maximaum stress anisotropy on ellipsoid.</p></td>
 </tr>
-<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">tissue_stress_tensor</span></code>(ellipsoid, ...)</p></td>
+<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">tissue_stress_tensor</span></code>(ellipsoid, ...)</p></td>
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 </tr>
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-    <link rel="next" title="napari_stress.measurements.utils" href="napari_stress.measurements.utils.html" />
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@@ -228,7 +228,6 @@
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@@ -456,11 +455,11 @@ <h1>napari_stress.measurements.toolbox</h1>
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-        <p class="prev-next-title">napari_stress.measurements.utils</p>
+        <p class="prev-next-title">napari_stress.reconstruction</p>
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diff --git a/06_API/_autosummary/napari_stress.measurements.utils.html b/06_API/_autosummary/napari_stress.measurements.utils.html
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-<p class="rubric">Functions</p>
-<table class="autosummary longtable table autosummary">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
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-<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">convert</span></code>(value, new_annotation)</p></td>
-<td><p>Check if an object is of a specific type and convert if it isn't.</p></td>
-</tr>
-<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">naparify_measurement</span></code>(function)</p></td>
-<td><p>Compatibility decorator for napari-stress measurement functions.</p></td>
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diff --git a/06_API/_autosummary/napari_stress.reconstruction.html b/06_API/_autosummary/napari_stress.reconstruction.html
index c0a18b4a..9f34bef6 100644
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     </a>
     <a class="right-next"
diff --git a/06_API/_autosummary/napari_stress.reconstruction.reconstruct_surface.html b/06_API/_autosummary/napari_stress.reconstruction.reconstruct_surface.html
index 0f5f52c8..192c85eb 100644
--- a/06_API/_autosummary/napari_stress.reconstruction.reconstruct_surface.html
+++ b/06_API/_autosummary/napari_stress.reconstruction.reconstruct_surface.html
@@ -228,7 +228,6 @@
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 current active has-children"><a class="reference internal" href="napari_stress.reconstruction.html">napari_stress.reconstruction</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
diff --git a/06_API/_autosummary/napari_stress.reconstruction.refine_surfaces.html b/06_API/_autosummary/napari_stress.reconstruction.refine_surfaces.html
index f809ba7f..85c44792 100644
--- a/06_API/_autosummary/napari_stress.reconstruction.refine_surfaces.html
+++ b/06_API/_autosummary/napari_stress.reconstruction.refine_surfaces.html
@@ -228,7 +228,6 @@
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 current active has-children"><a class="reference internal" href="napari_stress.reconstruction.html">napari_stress.reconstruction</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
diff --git a/06_API/_autosummary/napari_stress.reconstruction.toolbox.html b/06_API/_autosummary/napari_stress.reconstruction.toolbox.html
index 1714ac19..6004ac79 100644
--- a/06_API/_autosummary/napari_stress.reconstruction.toolbox.html
+++ b/06_API/_autosummary/napari_stress.reconstruction.toolbox.html
@@ -227,7 +227,6 @@
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 current active has-children"><a class="reference internal" href="napari_stress.reconstruction.html">napari_stress.reconstruction</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul class="current">
@@ -396,7 +395,7 @@ <h1>napari_stress.reconstruction.toolbox</h1>
 </colgroup>
 <tbody>
 <tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">reconstruct_droplet</span></code>(image[, voxelsize, ...])</p></td>
-<td><p></p></td>
+<td><p>Reconstruct droplet surface from points layer.</p></td>
 </tr>
 </tbody>
 </table>
diff --git a/06_API/_autosummary/napari_stress.vectors.html b/06_API/_autosummary/napari_stress.vectors.html
index 1189ac12..d0ef1b3b 100644
--- a/06_API/_autosummary/napari_stress.vectors.html
+++ b/06_API/_autosummary/napari_stress.vectors.html
@@ -228,7 +228,6 @@
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="napari_stress.reconstruction.html">napari_stress.reconstruction</a><input class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul>
diff --git a/06_API/api.html b/06_API/api.html
index 316c0d82..6c9a1f3d 100644
--- a/06_API/api.html
+++ b/06_API/api.html
@@ -228,7 +228,6 @@
 <li class="toctree-l3"><a class="reference internal" href="_autosummary/napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="_autosummary/napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="_autosummary/napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="_autosummary/napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="_autosummary/napari_stress.reconstruction.html">napari_stress.reconstruction</a><input class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul>
diff --git a/_sources/06_API/_autosummary/napari_stress.measurements.rst b/_sources/06_API/_autosummary/napari_stress.measurements.rst
index bdf9a54f..c5ab0b6d 100644
--- a/_sources/06_API/_autosummary/napari_stress.measurements.rst
+++ b/_sources/06_API/_autosummary/napari_stress.measurements.rst
@@ -35,5 +35,4 @@
    napari_stress.measurements.stresses
    napari_stress.measurements.temporal_correlation
    napari_stress.measurements.toolbox
-   napari_stress.measurements.utils
 
diff --git a/_sources/06_API/_autosummary/napari_stress.measurements.stresses.rst b/_sources/06_API/_autosummary/napari_stress.measurements.stresses.rst
index decb56c1..d33ef3a6 100644
--- a/_sources/06_API/_autosummary/napari_stress.measurements.stresses.rst
+++ b/_sources/06_API/_autosummary/napari_stress.measurements.stresses.rst
@@ -14,6 +14,7 @@ napari\_stress.measurements.stresses
    .. autosummary::
    
       anisotropic_stress
+      calculate_anisotropy
       maximal_tissue_anisotropy
       tissue_stress_tensor
    
diff --git a/_sources/06_API/_autosummary/napari_stress.measurements.utils.rst b/_sources/06_API/_autosummary/napari_stress.measurements.utils.rst
deleted file mode 100644
index c916f155..00000000
--- a/_sources/06_API/_autosummary/napari_stress.measurements.utils.rst
+++ /dev/null
@@ -1,30 +0,0 @@
-napari\_stress.measurements.utils
-=================================
-
-.. automodule:: napari_stress.measurements.utils
-
-   
-   
-   
-
-   
-   
-   .. rubric:: Functions
-
-   .. autosummary::
-   
-      convert
-      naparify_measurement
-   
-   
-
-   
-   
-   
-
-   
-   
-   
-
-
-
diff --git a/genindex.html b/genindex.html
index 7e3529d3..39f312d1 100644
--- a/genindex.html
+++ b/genindex.html
@@ -225,7 +225,6 @@
 <li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="06_API/_autosummary/napari_stress.reconstruction.html">napari_stress.reconstruction</a><input class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul>
@@ -372,8 +371,6 @@ <h2 id="M">M</h2>
         <li><a href="06_API/_autosummary/napari_stress.measurements.temporal_correlation.html#module-napari_stress.measurements.temporal_correlation">napari_stress.measurements.temporal_correlation</a>
 </li>
         <li><a href="06_API/_autosummary/napari_stress.measurements.toolbox.html#module-napari_stress.measurements.toolbox">napari_stress.measurements.toolbox</a>
-</li>
-        <li><a href="06_API/_autosummary/napari_stress.measurements.utils.html#module-napari_stress.measurements.utils">napari_stress.measurements.utils</a>
 </li>
         <li><a href="06_API/_autosummary/napari_stress.reconstruction.html#module-napari_stress.reconstruction">napari_stress.reconstruction</a>
 </li>
@@ -448,6 +445,8 @@ <h2 id="N">N</h2>
         <li><a href="06_API/_autosummary/napari_stress.measurements.measurements.html#module-napari_stress.measurements.measurements">module</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     napari_stress.measurements.stresses
 
@@ -455,8 +454,6 @@ <h2 id="N">N</h2>
         <li><a href="06_API/_autosummary/napari_stress.measurements.stresses.html#module-napari_stress.measurements.stresses">module</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     napari_stress.measurements.temporal_correlation
 
@@ -469,13 +466,6 @@ <h2 id="N">N</h2>
 
       <ul>
         <li><a href="06_API/_autosummary/napari_stress.measurements.toolbox.html#module-napari_stress.measurements.toolbox">module</a>
-</li>
-      </ul></li>
-      <li>
-    napari_stress.measurements.utils
-
-      <ul>
-        <li><a href="06_API/_autosummary/napari_stress.measurements.utils.html#module-napari_stress.measurements.utils">module</a>
 </li>
       </ul></li>
       <li>
diff --git a/intro.html b/intro.html
index 0aab7a06..c5c0bc5b 100644
--- a/intro.html
+++ b/intro.html
@@ -227,7 +227,6 @@
 <li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="06_API/_autosummary/napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="06_API/_autosummary/napari_stress.reconstruction.html">napari_stress.reconstruction</a><input class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul>
diff --git a/objects.inv b/objects.inv
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+++ b/tutorials/demo/demo_register_napari_stress_types.html
@@ -226,7 +226,6 @@
 <li class="toctree-l3"><a class="reference internal" href="../../06_API/_autosummary/napari_stress.measurements.stresses.html">napari_stress.measurements.stresses</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../06_API/_autosummary/napari_stress.measurements.temporal_correlation.html">napari_stress.measurements.temporal_correlation</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../06_API/_autosummary/napari_stress.measurements.toolbox.html">napari_stress.measurements.toolbox</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../06_API/_autosummary/napari_stress.measurements.utils.html">napari_stress.measurements.utils</a></li>
 </ul>
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="../../06_API/_autosummary/napari_stress.reconstruction.html">napari_stress.reconstruction</a><input class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-11"><i class="fa-solid fa-chevron-down"></i></label><ul>