Allow custom ploidy regions in HaplotypeCaller #8464
54.450% of diff hit (target 86.344%)
View this Pull Request on Codecov
54.450% of diff hit (target 86.344%)
Annotations
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/copynumber/formats/records/SimpleCount.java#L27
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/copynumber/formats/records/SimpleCount.java#L29-L34
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/genotyper/MinimalGenotypingEngine.java#L93
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L213-L214
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L219
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L221
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L647
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L685
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L867
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerGenotypingEngine.java#L209
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java#L463
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java#L483
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java#L524
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codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/RampedHaplotypeCallerEngine.java#L547
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L952
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L954-L956
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L958
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L962
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L964
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L968
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L970-L971
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L976
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L978-L980
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L982
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codecov / codecov/patch
src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java#L986
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