Berkeley Analysis and Storage Toolkit (BASTet)
The BASTet project page is located at https://openmsi.nersc.gov/openmsi/client/bastet.html
The online documentation for BASTet is available at:
- HTML: https://biorack.github.io/BASTet/.
- PDF: https://biorack.github.io/BASTet/_static/bastet_doc.pdf
- Developer documentation of the main
omsipackage see here - Building the online documentation see here
- Developing a new analysis see here
- Defining and executing workflows see here
- High-level description of the OpenMSI data format see here
The data format for storage of MSI data is described in the following publication:
Oliver Rübel, Annette Greiner, Shreyas Cholia, Katherine Louie, E. Wes Bethel, Trent R. Northen, and Benjamin P. Bowen, "OpenMSI: A High-Performance Web-Based Platform for Mass Spectrometry Imaging" Analytical Chemistry 2013 85 (21), 10354-10361, DOI: 10.1021/ac402540a. [BibTeX][Online at ACS]
The broader storage, analysis, provenance, and workflow capabilities of BASTet are described in an upcoming publication:
Oliver Rübel and Benjamin P. Bowen, "BASTet: Shareable and reproducible analysis and visualization of mass spectrometry imaging data via OpenMSI," submitted March, 2016
See license.txt
See copyright.txt