Hello, in ontology propagation annotation, what relationships between ontologies do you consider?

[nebstudio]

No description provided.

[coolmaksat]

Hi, we follow CAFA rules and consider all relations such as part_of, regulates, occurs_in, and etc.
Have a look here

deepgo2/deepgo/utils.py

Line 142 in fe6f9b0

elif with_rels and l[0] == 'relationship':

[nebstudio]

But I found that in the get_ancestors function of utils.py, in this code, only the is_a relationship is used to find the ancestor node:
for parent_id in self.ont[t_id]['is_a']:
if parent_id in self.ont:
q.append(parent_id)
Is my understanding wrong?

[coolmaksat]

Hi, all relations are considered as 'is_a', if with_rels parameter of ontology class is set to True