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How to use deepgo2 to predict functions from multifasta file without GPU #2

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Rohit-Satyam opened this issue Apr 7, 2024 · 1 comment
Open

How to use deepgo2 to predict functions from multifasta file without GPU #2

Rohit-Satyam opened this issue Apr 7, 2024 · 1 comment

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@Rohit-Satyam
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Rohit-Satyam commented Apr 7, 2024 •
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Hi @leechuck @coolmaksat @ferzcam

I was checking out the deepgo2 paper and wanted to know if there is a way to run predictions on our custom protein multifasta file using deepgo2 without GPU.
@Rohit-Satyam Rohit-Satyam changed the title How to use deepgo2 to predict functions from multifasta file How to use deepgo2 to predict functions from multifasta file without GPU Apr 7, 2024
@coolmaksat
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Hi,
Sorry for the late reply, it runs on cpu, there is a parameter (--device/-d) in predict.py script. However, it might take a long time to get the ESM2 embeddings.

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@coolmaksat @Rohit-Satyam