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Get data from Yu et al (2011) #15

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cbergman opened this issue Jun 17, 2013 · 4 comments

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cbergman commented Jun 17, 2013

reference is http://www.ncbi.nlm.nih.gov/pubmed/21523651
4414-bp element, non-autonomous LTR element
related to D. yakuba Pifo_I: http://www.girinst.org/protected/repbase_extract.php?access=Pifo_I
state that insertion site is at 18,929,626 on chr2R

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cbergman commented Jun 17, 2013

emailed corresponding author 2013-6-17

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cbergman commented Jun 20, 2013 •

edited

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Data sent by Bo Yu on 2013-6-20, file is in https://github.com/bergmanlb/transposons/tree/master/personal_communications/yu

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cbergman commented Jun 20, 2013

related to Tirant
good hits on chrX in nest that currently has no homology to known TEs
TE is in - orientation in Yu pers. com.
incomplete element

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cbergman commented Jun 20, 2013

need to revcomp, map to genome and try to find complete element

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