docker image ModuleNotFoundError

[ltnetcase]

When I try to install bcbio-nextgen-vm with fresh install, I got the following error (run again the same command):

$ bcbio_vm.py --datadir=/GeneCloud001/sysadmin/bcbio-data install --data --tools --genomes GRCh37 --aligners bwa --core 10
Retrieving bcbio-nextgen docker image with code and tools
Using default tag: latest
Trying to pull repository quay.io/bcbio/bcbio-vc ...
latest: Pulling from quay.io/bcbio/bcbio-vc
Digest: sha256:cc44e242be9875bea6542b706033897279aa4301cf4800d25de8bb2e51e57bdc
Status: Image is up to date for quay.io/bcbio/bcbio-vc:latest
[2020-10-28T02:58Z] DEBUG: Running in docker container: d4d571b2164bb9342782397f2bce4116f49aadfa29ec8a07d9bc4136d6340029
[2020-10-28T02:58Z] DEBUG: docker attach --no-stdin d4d571b2164bb9342782397f2bce4116f49aadfa29ec8a07d9bc4136d6340029
[2020-10-28T02:58Z] DEBUG: Traceback (most recent call last):
[2020-10-28T02:58Z] DEBUG: File "/usr/local/bin/bcbio_nextgen.py", line 34, in
[2020-10-28T02:58Z] DEBUG: from bcbio.setpath import prepend_bcbiopath
[2020-10-28T02:58Z] DEBUG: ModuleNotFoundError: No module named 'bcbio'
[2020-10-28T02:58Z] ERROR: Uncaught exception occurred
Traceback (most recent call last):
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbio/provenance/do.py", line 26, in run
_do_run(cmd, checks, log_stdout, env=env)
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbio/provenance/do.py", line 106, in _do_run
raise subprocess.CalledProcessError(exitcode, error_msg)
subprocess.CalledProcessError: Command 'docker attach --no-stdin d4d571b2164bb9342782397f2bce4116f49aadfa29ec8a07d9bc4136d6340029
Traceback (most recent call last):
File "/usr/local/bin/bcbio_nextgen.py", line 34, in
from bcbio.setpath import prepend_bcbiopath
ModuleNotFoundError: No module named 'bcbio'
' returned non-zero exit status 1.
Stopping docker container
Traceback (most recent call last):
File "/usr/local/opt/anaconda/envs/bcbio/bin/bcbio_vm.py", line 354, in
args.func(args)
File "/usr/local/opt/anaconda/envs/bcbio/bin/bcbio_vm.py", line 40, in cmd_install
install.full(args, devel.DOCKER)
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbiovm/docker/install.py", line 29, in full
manage.run_bcbio_cmd(args.image, dmounts, ["upgrade"])
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbiovm/docker/manage.py", line 48, in run_bcbio_cmd
raise e
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbiovm/docker/manage.py", line 44, in run_bcbio_cmd
log_stdout=True)
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbio/provenance/do.py", line 26, in run
_do_run(cmd, checks, log_stdout, env=env)
File "/usr/local/opt/anaconda/envs/bcbio/lib/python3.7/site-packages/bcbio/provenance/do.py", line 106, in _do_run
raise subprocess.CalledProcessError(exitcode, error_msg)
subprocess.CalledProcessError: Command 'docker attach --no-stdin d4d571b2164bb9342782397f2bce4116f49aadfa29ec8a07d9bc4136d6340029
Traceback (most recent call last):
File "/usr/local/bin/bcbio_nextgen.py", line 34, in
from bcbio.setpath import prepend_bcbiopath
ModuleNotFoundError: No module named 'bcbio'

Can anyone help to fix this issue? It seems like an old issue here

[hackdna]

More information here: bcbio/bcbio_docker#4