From ed03c9a74589620d9145d60767eade680dc13b3e Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Thu, 11 Jul 2024 11:42:50 +0200 Subject: [PATCH 01/18] Domsdatabasen --- .gitignore | 3 + .pre-commit-config.yaml | 1 + README.md | 8 + poetry.lock | 3010 +++++++++++++++-- pyproject.toml | 1 + src/alexandra_ai_data/config_domsdatabasen.py | 105 + src/alexandra_ai_data/domsdatabasen.py | 75 + src/scripts/domsdatabasen_example_usage.py | 7 + 8 files changed, 2998 insertions(+), 212 deletions(-) create mode 100644 src/alexandra_ai_data/config_domsdatabasen.py create mode 100644 src/alexandra_ai_data/domsdatabasen.py create mode 100644 src/scripts/domsdatabasen_example_usage.py diff --git a/.gitignore b/.gitignore index af25f98..aec0971 100644 --- a/.gitignore +++ b/.gitignore @@ -113,3 +113,6 @@ models/* # Dotenv file with name and email .name_and_email + + +znotes.md diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 56e1bb9..8e12175 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,6 +9,7 @@ repos: - id: ruff args: [--fix, --exit-non-zero-on-fix] types_or: [python, pyi, jupyter] + exclude: src/alexandra_ai_data/config_domsdatabasen.py - repo: https://github.com/kynan/nbstripout rev: 0.6.0 hooks: diff --git a/README.md b/README.md index 088b681..946cd0c 100644 --- a/README.md +++ b/README.md @@ -20,6 +20,14 @@ To install the package simply write the following command in your favorite termi pip install alexandra-ai-data ``` +### Domsdatabasen +The processing part of the Domsdatabasen API depends on [poppler](https://poppler.freedesktop.org/). To install it on macOS, run the following command: + +``` +brew install poppler +``` + +This is only necessary if you use the API to get cases that are not in [the cached dataset](https://huggingface.co/datasets/alexandrainst/domsdatabasen). ## Quickstart diff --git a/poetry.lock b/poetry.lock index 5815394..64abe8a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,5 +1,239 @@ # This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +[[package]] +name = "aiohttp" +version = "3.9.5" +description = "Async http client/server framework (asyncio)" +optional = false +python-versions = ">=3.8" +files = [ + {file = "aiohttp-3.9.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:fcde4c397f673fdec23e6b05ebf8d4751314fa7c24f93334bf1f1364c1c69ac7"}, + {file = "aiohttp-3.9.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:5d6b3f1fabe465e819aed2c421a6743d8debbde79b6a8600739300630a01bf2c"}, + {file = "aiohttp-3.9.5-cp310-cp310-macosx_11_0_arm64.whl", hash = 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+domsdatabasen = "^0.1.4" [tool.poetry.group.dev.dependencies] pytest = "^7.4.2" diff --git a/src/alexandra_ai_data/config_domsdatabasen.py b/src/alexandra_ai_data/config_domsdatabasen.py new file mode 100644 index 0000000..9946004 --- /dev/null +++ b/src/alexandra_ai_data/config_domsdatabasen.py @@ -0,0 +1,105 @@ +from omegaconf import OmegaConf, DictConfig + + +config: DictConfig = OmegaConf.create( + { + "scrape": { + "paths": {"download_dir": "download_tmp/", "test_dir": "tmp/"}, + "force": False, + "case_id": "1", + "all": False, + "start_case_id": "3962", + "messages": { + "give_correct_input": "Please specify either a 'case_id' or use 'all' to scrape all cases.\n", + "done": "Scraping done!\n", + }, + "test_case_name": "test_case", + "test_case_id": "1", + "sleep": 5, + "max_consecutive_nonexistent_page_count": 100, + "timeout_pdf_download": 10, + }, + "process": { + "paths": { + "test_data_raw_dir": "tests/data/processor/raw/", + "test_data_processed_dir": "tests/data/processor/processed", + "blacklist": "data/blacklists/process.jsonl", + }, + "force": False, + "case_id": "1", + "all": False, + "start_case_id": "2732", + "blacklist_flag": False, + "test_case_id": "1", + "page_number": False, + "gpu": False, + "max_y_difference": 25, + "neighbor_distance_max": 1, + "box_area_min": 2500, + "box_height_min": 35, + "box_height_upper": 110, + "box_width_min": 35, + "box_accept_ratio": 0.6, + "box_split_white_space": 7, + "shift_up": 0, + "iou_overlap_threshold": 0.5, + "indices_to_split_edge_min_length": 5, + "edge_accept_ratio": 0.95, + "indices_to_split_row_diff": 45, + "max_scale": 1.5, + "anonymized_box_crop_padding": 3, + "make_split_between_overlapping_box_and_line_height_max": 30, + "box_split_delta": 2, + "threshold_binarize_process_image": 50, + "threshold_binarize_anonymized_boxes": 75, + "threshold_binarize_empty_box": 100, + "threshold_binarize_top_page": 230, + "threshold_binarize_process_crop": 200, + "threshold_gap": 11, + "threshold_box_confidence": 0.3, + "threshold_remove_boundary_height": 20, + "threshold_remove_boundary_length": 50, + "threshold_remove_boundary_closely_square": 3, + "threshold_remove_boundary_too_few_pixels": 10, + "threshold_footnote_height": 30, + "invert_find_anonymized_boxes": False, + "invert_find_underline_anonymizations": True, + "underline_length_min": 26, + "underline_height_lower_bound": 2, + "underline_height_upper_bound": 7, + "underline_remove_pad": 1, + "underline_box_height": 50, + "underline_box_height_min": 32, + "underline_box_expand": 3, + "threshold_binarize_line_anonymization": 255, + "line_start_ignore_col": 1250, + "line_start_ignore_row": 3000, + "remove_cell_border": 5, + "cell_box_shrink": 5, + "cell_box_crop_padding": 3, + "cell_multiple_lines_gap_threshold": 10, + "remove_table_border": 7, + "threshold_binarize_process_before_table_search": 1, + "origin_box": "box", + "origin_underline": "underline", + "page_from_top_to_this_row": 500, + "logo_bbox_area_threshold": 50000, + }, + "finalize": {"force": False}, + "domsdatabasen": {"url": "https://domsdatabasen.dk/#sag"}, + "paths": { + "hf_hub": "alexandrainst/domsdatabasen", + "data_raw_dir": "data/raw/", + "data_processed_dir": "data/processed", + "data_final_dir": "data/final", + }, + "file_names": { + "tabular_data": "tabular_data.json", + "pdf_document": "document.pdf", + "processed_data": "processed_data.json", + "dataset": "dataset.jsonl", + }, + "anon_method": {"underline": "underline", "box": "box", "none": "none"}, + "testing": False, + } +) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py new file mode 100644 index 0000000..ddb6968 --- /dev/null +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -0,0 +1,75 @@ +"""API for accessing processed data from Domsdatabasen.""" + +from omegaconf import DictConfig + +from domsdatabasen import DatasetBuilder, Scraper, Processor + +from .config_domsdatabasen import config + +from logging import getLogger + +from datasets import load_dataset + +logger = getLogger(__name__) + + +class DomsDatabasen: + """API for accessing processed data from Domsdatabasen + + Attributes: + config (DictConfig): + Configuration settings object. + scraper (Scraper): + Scraper object for scraping data from Domsdatabasen. + processor (Processor): + Processor object for processing scraped data. + dataset_builder (DatasetBuilder): + DatasetBuilder object for building dataset samples. + dataset (Dataset): + Dataset of processed data from Domsdatabasen. + """ + + def __init__(self): + """Initialize.""" + self.config: DictConfig = config + self.dataset = load_dataset("alexandrainst/domsdatabasen")["train"] + + def get_case(self, case_id: str) -> dict: + """Get processed data for a case from Domsdatabasen. + + If the case_id is already in the dataset, the data is returned from the dataset. + Else, the case will be scraped and processed. + + Args: + case_id (str): + The case_id of the case to get data for. + + Returns: + dataset_sample (dict): + Processed data for the case. + """ + if isinstance(case_id, int): + case_id = str(case_id) + + # Check if case_id is already in dataset + for dataset_sample in self.dataset: + if dataset_sample["case_id"] == case_id: + logger.info(f"Found case_id {case_id} in cached dataset.") + return dataset_sample + + # If case_id is not in dataset, scrape and process the case + logger.info( + f"Case_id {case_id} not found in cached dataset. " + "Scraping and processing the case..." + ) + scraper = Scraper(config=config) + processor = Processor(config=config) + dataset_builder = DatasetBuilder(config=config) + + scraper.scrape(case_id=case_id) + processed_data = processor.process(case_id=case_id) + dataset_sample = dataset_builder.make_dataset_sample( + processed_data=processed_data + ) + + return dataset_sample diff --git a/src/scripts/domsdatabasen_example_usage.py b/src/scripts/domsdatabasen_example_usage.py new file mode 100644 index 0000000..072d12b --- /dev/null +++ b/src/scripts/domsdatabasen_example_usage.py @@ -0,0 +1,7 @@ +from alexandra_ai_data.domsdatabasen import DomsDatabasen + +domsdatabasen = DomsDatabasen() + +case = domsdatabasen.get_case(case_id="100") + +print(case) From 8fce6a5e5c36eda4da4e57602aeeefd7f9558604 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Thu, 11 Jul 2024 11:46:44 +0200 Subject: [PATCH 02/18] Potery update --- poetry.lock | 336 +++++++++++++++++++++++++++++++++++++++++++++++++++- 1 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-content-hash = "77a2be3e09180abd304cbe096d824316a060b8adaea55dd3ddb38252380d3d79" +content-hash = "f9f4c8d63d4d9d463ad3157888c696627c740f8e333358e426dcbcc6bde8046a" From 1b73c7ce574637ae94ffe37ae2d7fd69ec3559c9 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Thu, 11 Jul 2024 11:48:11 +0200 Subject: [PATCH 03/18] DomsDatabasen -> Domsdatabasen --- src/alexandra_ai_data/domsdatabasen.py | 2 +- src/scripts/domsdatabasen_example_usage.py | 6 ++++-- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index ddb6968..50162f6 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -13,7 +13,7 @@ logger = getLogger(__name__) -class DomsDatabasen: +class Domsdatabasen: """API for accessing processed data from Domsdatabasen Attributes: diff --git a/src/scripts/domsdatabasen_example_usage.py b/src/scripts/domsdatabasen_example_usage.py index 072d12b..b850f66 100644 --- a/src/scripts/domsdatabasen_example_usage.py +++ b/src/scripts/domsdatabasen_example_usage.py @@ -1,6 +1,8 @@ -from alexandra_ai_data.domsdatabasen import DomsDatabasen +"""Example usage of the Domsdatabasen API""" -domsdatabasen = DomsDatabasen() +from alexandra_ai_data.domsdatabasen import Domsdatabasen + +domsdatabasen = Domsdatabasen() case = domsdatabasen.get_case(case_id="100") From c1ba8600ce38769a0e39b3d957ef3849434e3a17 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Thu, 11 Jul 2024 11:56:39 +0200 Subject: [PATCH 04/18] Dont initialize objects before they are needed. --- src/alexandra_ai_data/domsdatabasen.py | 29 +++++++++++++++++++------- 1 file changed, 22 insertions(+), 7 deletions(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index 50162f6..41e5c37 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -34,6 +34,12 @@ def __init__(self): self.config: DictConfig = config self.dataset = load_dataset("alexandrainst/domsdatabasen")["train"] + # The following objects will not be initialized until + # the first time they are needed. + self.scraper = None + self.processor = None + self.dataset_builder = None + def get_case(self, case_id: str) -> dict: """Get processed data for a case from Domsdatabasen. @@ -62,14 +68,23 @@ def get_case(self, case_id: str) -> dict: f"Case_id {case_id} not found in cached dataset. " "Scraping and processing the case..." ) - scraper = Scraper(config=config) - processor = Processor(config=config) - dataset_builder = DatasetBuilder(config=config) - - scraper.scrape(case_id=case_id) - processed_data = processor.process(case_id=case_id) - dataset_sample = dataset_builder.make_dataset_sample( + self._initialze_objects() + self.scraper.scrape(case_id=case_id) + processed_data = self.processor.process(case_id=case_id) + dataset_sample = self.dataset_builder.make_dataset_sample( processed_data=processed_data ) return dataset_sample + + def _initialze_objects(self): + """Initialize Scraper, Processor and DatasetBuilder objects. + + We don't want to initialize these objects before they are needed. + """ + if self.scraper is not None: + return + + self.scraper = Scraper(config=self.config) + self.processor = Processor(config=self.config) + self.dataset_builder = DatasetBuilder(config=self.config) From 2e9aef80cbbb8c4a6f6a30aa43eef00cc7c74e36 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Thu, 11 Jul 2024 12:12:35 +0200 Subject: [PATCH 05/18] Test gpg key --- src/alexandra_ai_data/domsdatabasen.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index 41e5c37..4fe716a 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -1,4 +1,4 @@ -"""API for accessing processed data from Domsdatabasen.""" +"""API for accessing processed data from Domsdataabasen.""" from omegaconf import DictConfig From 35e3d97e0e2988cfd7bcedf198c96a7e3f2052b7 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Thu, 11 Jul 2024 12:13:32 +0200 Subject: [PATCH 06/18] Back again --- src/alexandra_ai_data/domsdatabasen.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index 4fe716a..41e5c37 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -1,4 +1,4 @@ -"""API for accessing processed data from Domsdataabasen.""" +"""API for accessing processed data from Domsdatabasen.""" from omegaconf import DictConfig From 91d8ec2784c4f99abac91fd3c338505816721da8 Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 14:55:19 +0200 Subject: [PATCH 07/18] chore: Update CI workflow --- .github/workflows/ci.yaml | 18 ++++++++++++------ .github/workflows/docs.yaml | 4 ++-- 2 files changed, 14 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index bc9c446..c6c5d9c 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -2,28 +2,34 @@ name: CI on: pull_request: + types: + - opened + - synchronize + - reopened + - ready_for_review branches: - main jobs: - lint: + if: github.event.pull_request.draft == false runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 - - uses: jpetrucciani/black-check@master + - uses: actions/checkout@v4 + - uses: jpetrucciani/ruff-check@main pytest: + if: github.event.pull_request.draft == false strategy: matrix: os: [ubuntu-latest] python-version: ["3.11"] runs-on: ${{ matrix.os }} steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Install Poetry - run: pip3 install poetry==1.4.0 + run: pipx install poetry==1.8.2 - name: Set up Python uses: actions/setup-python@v4 @@ -37,4 +43,4 @@ jobs: poetry install --no-interaction --no-cache - name: Test with pytest - run: poetry run pytest --dist no -n 0 + run: poetry run pytest diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index d4f084d..705526a 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -15,10 +15,10 @@ jobs: build: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Install Poetry - run: pip3 install poetry==1.4.0 + run: pipx install poetry==1.8.2 - name: Set up Python uses: actions/setup-python@v4 From 97ada2000f22f8a3acd4f6c31f5c32cd6c68834e Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 14:57:27 +0200 Subject: [PATCH 08/18] style: Ruff --- src/alexandra_ai_data/config_domsdatabasen.py | 3 ++- src/alexandra_ai_data/domsdatabasen.py | 12 +++++------- 2 files changed, 7 insertions(+), 8 deletions(-) diff --git a/src/alexandra_ai_data/config_domsdatabasen.py b/src/alexandra_ai_data/config_domsdatabasen.py index 9946004..6091f56 100644 --- a/src/alexandra_ai_data/config_domsdatabasen.py +++ b/src/alexandra_ai_data/config_domsdatabasen.py @@ -1,5 +1,6 @@ -from omegaconf import OmegaConf, DictConfig +"""Configuration for the domsdatabasen package.""" +from omegaconf import DictConfig, OmegaConf config: DictConfig = OmegaConf.create( { diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index 41e5c37..f9c86b7 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -1,20 +1,18 @@ """API for accessing processed data from Domsdatabasen.""" -from omegaconf import DictConfig - -from domsdatabasen import DatasetBuilder, Scraper, Processor - -from .config_domsdatabasen import config - from logging import getLogger from datasets import load_dataset +from domsdatabasen import DatasetBuilder, Processor, Scraper +from omegaconf import DictConfig + +from .config_domsdatabasen import config logger = getLogger(__name__) class Domsdatabasen: - """API for accessing processed data from Domsdatabasen + """API for accessing processed data from Domsdatabasen. Attributes: config (DictConfig): From f3ad4ed7c3a9dd965e73b8e8fa18eec543faadd5 Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 14:57:52 +0200 Subject: [PATCH 09/18] style: Ruff --- src/scripts/domsdatabasen_example_usage.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/scripts/domsdatabasen_example_usage.py b/src/scripts/domsdatabasen_example_usage.py index b850f66..e2f93b4 100644 --- a/src/scripts/domsdatabasen_example_usage.py +++ b/src/scripts/domsdatabasen_example_usage.py @@ -1,4 +1,4 @@ -"""Example usage of the Domsdatabasen API""" +"""Example usage of the Domsdatabasen API.""" from alexandra_ai_data.domsdatabasen import Domsdatabasen From 307564b07a981fd60bd0b63d2f6ea0aa46b17bda Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 15:00:17 +0200 Subject: [PATCH 10/18] chore: Add `make lint` and `make type-check` --- makefile | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/makefile b/makefile index 16ff65c..9712887 100644 --- a/makefile +++ b/makefile @@ -123,6 +123,12 @@ publish-minor: bump-minor publish ## Publish a minor version publish-patch: bump-patch publish ## Publish a patch version +lint: ## Lint code + @poetry run ruff check . --fix + +type-check: ## Run type checking + @poetry run mypy . --install-types --non-interactive --ignore-missing-imports --show-error-codes + test: ## Run tests @poetry run pytest && poetry run readme-cov From 7bb4b61222da6c94d913a9c8ae3a2ca3ac7bcb9e Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 15:01:24 +0200 Subject: [PATCH 11/18] chore: Make pre-commit hooks optional --- makefile | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/makefile b/makefile index 9712887..83f62cb 100644 --- a/makefile +++ b/makefile @@ -41,7 +41,10 @@ install: ## Install dependencies @$(MAKE) --quiet install-poetry @$(MAKE) --quiet setup-poetry @$(MAKE) --quiet setup-environment-variables - @echo "Installed the 'ScandEval' project." + @echo "Installed the 'ScandEval' project. If you want to use pre-commit hooks, run 'make install-pre-commit'." + +install-pre-commit: ## Install pre-commit hooks + @poetry run pre-commit install install-brew: @if [ $$(uname) = "Darwin" ] && [ "$(shell which brew)" = "" ]; then \ @@ -72,7 +75,6 @@ install-poetry: setup-poetry: @poetry env use python3.11 @poetry install - @poetry run pre-commit install setup-environment-variables: @poetry run python src/scripts/fix_dot_env_file.py From b4a8ae187b4bd055d4d8dcc65530d61029f29fd8 Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 15:24:54 +0200 Subject: [PATCH 12/18] chore: `make lint` and `make type-check` on `src` folder --- makefile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/makefile b/makefile index 83f62cb..37bdbd6 100644 --- a/makefile +++ b/makefile @@ -126,10 +126,10 @@ publish-minor: bump-minor publish ## Publish a minor version publish-patch: bump-patch publish ## Publish a patch version lint: ## Lint code - @poetry run ruff check . --fix + @poetry run ruff check src --fix type-check: ## Run type checking - @poetry run mypy . --install-types --non-interactive --ignore-missing-imports --show-error-codes + @poetry run mypy src --install-types --non-interactive --ignore-missing-imports --show-error-codes test: ## Run tests @poetry run pytest && poetry run readme-cov From 99e0d0a83e18c529583f1f1d3525daf8a90a14c8 Mon Sep 17 00:00:00 2001 From: Dan Saattrup Nielsen Date: Mon, 15 Jul 2024 15:30:57 +0200 Subject: [PATCH 13/18] chore: Add --check-untyped-defs --- makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/makefile b/makefile index 37bdbd6..6f1f217 100644 --- a/makefile +++ b/makefile @@ -129,7 +129,7 @@ lint: ## Lint code @poetry run ruff check src --fix type-check: ## Run type checking - @poetry run mypy src --install-types --non-interactive --ignore-missing-imports --show-error-codes + @poetry run mypy src --install-types --non-interactive --ignore-missing-imports --show-error-codes --check-untyped-defs test: ## Run tests @poetry run pytest && poetry run readme-cov From 270670c1eb13fb1cdbc5f9602c46c1dc2adda190 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Wed, 17 Jul 2024 10:50:12 +0200 Subject: [PATCH 14/18] Use split arg --- src/alexandra_ai_data/domsdatabasen.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index f9c86b7..6befa3f 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -30,7 +30,7 @@ class Domsdatabasen: def __init__(self): """Initialize.""" self.config: DictConfig = config - self.dataset = load_dataset("alexandrainst/domsdatabasen")["train"] + self.dataset = load_dataset("alexandrainst/domsdatabasen", split="train") # The following objects will not be initialized until # the first time they are needed. From af6228263ca0e7fc89920a0f3a58c8ce2718deae Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Wed, 17 Jul 2024 10:52:30 +0200 Subject: [PATCH 15/18] Allow type int for `case_id` --- src/alexandra_ai_data/domsdatabasen.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index 6befa3f..612fb98 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -1,6 +1,7 @@ """API for accessing processed data from Domsdatabasen.""" from logging import getLogger +from typing import Union from datasets import load_dataset from domsdatabasen import DatasetBuilder, Processor, Scraper @@ -38,14 +39,14 @@ def __init__(self): self.processor = None self.dataset_builder = None - def get_case(self, case_id: str) -> dict: + def get_case(self, case_id: Union[str, int]) -> dict: """Get processed data for a case from Domsdatabasen. If the case_id is already in the dataset, the data is returned from the dataset. Else, the case will be scraped and processed. Args: - case_id (str): + case_id (str, int): The case_id of the case to get data for. Returns: From 1ce2b4a5cd104f261b63f499d48e37c313264d51 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Wed, 17 Jul 2024 10:52:58 +0200 Subject: [PATCH 16/18] Typo --- src/alexandra_ai_data/domsdatabasen.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/alexandra_ai_data/domsdatabasen.py b/src/alexandra_ai_data/domsdatabasen.py index 612fb98..a5d6986 100644 --- a/src/alexandra_ai_data/domsdatabasen.py +++ b/src/alexandra_ai_data/domsdatabasen.py @@ -67,7 +67,7 @@ def get_case(self, case_id: Union[str, int]) -> dict: f"Case_id {case_id} not found in cached dataset. " "Scraping and processing the case..." ) - self._initialze_objects() + self._initialize_objects() self.scraper.scrape(case_id=case_id) processed_data = self.processor.process(case_id=case_id) dataset_sample = self.dataset_builder.make_dataset_sample( @@ -76,7 +76,7 @@ def get_case(self, case_id: Union[str, int]) -> dict: return dataset_sample - def _initialze_objects(self): + def _initialize_objects(self): """Initialize Scraper, Processor and DatasetBuilder objects. We don't want to initialize these objects before they are needed. From 49720a30dee928245a56e723c67b426f6f481231 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Wed, 17 Jul 2024 10:55:33 +0200 Subject: [PATCH 17/18] Domsdatabasen example usage --- README.md | 11 ++++++++++- src/scripts/domsdatabasen_example_usage.py | 9 --------- 2 files changed, 10 insertions(+), 10 deletions(-) delete mode 100644 src/scripts/domsdatabasen_example_usage.py diff --git a/README.md b/README.md index a31331f..231bfa3 100644 --- a/README.md +++ b/README.md @@ -31,7 +31,16 @@ This is only necessary if you use the API to get cases that are not in [the cach ## Quickstart -TODO +### Domsdatabasen usage example +```python +from alexandra_ai_data.domsdatabasen import Domsdatabasen + +domsdatabasen = Domsdatabasen() + +case = domsdatabasen.get_case(case_id="100") + +print(case) +``` ## Contributors diff --git a/src/scripts/domsdatabasen_example_usage.py b/src/scripts/domsdatabasen_example_usage.py deleted file mode 100644 index e2f93b4..0000000 --- a/src/scripts/domsdatabasen_example_usage.py +++ /dev/null @@ -1,9 +0,0 @@ -"""Example usage of the Domsdatabasen API.""" - -from alexandra_ai_data.domsdatabasen import Domsdatabasen - -domsdatabasen = Domsdatabasen() - -case = domsdatabasen.get_case(case_id="100") - -print(case) From a87d4b55230545d3364c1f2ed5d0295856eceec7 Mon Sep 17 00:00:00 2001 From: Oliver Kinch Date: Wed, 17 Jul 2024 14:24:03 +0200 Subject: [PATCH 18/18] ScandEval -> AlexandraAI-data (typo) --- makefile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/makefile b/makefile index 6f1f217..e689a28 100644 --- a/makefile +++ b/makefile @@ -35,13 +35,13 @@ help: @grep -E '^[a-zA-Z_-]+:.*?## .*$$' makefile | sort | awk 'BEGIN {FS = ":.*?## "}; {printf "\033[36m%-30s\033[0m %s\n", $$1, $$2}' install: ## Install dependencies - @echo "Installing the 'ScandEval' project..." + @echo "Installing the 'AlexandraAI-data' project..." @$(MAKE) --quiet install-brew @$(MAKE) --quiet install-pipx @$(MAKE) --quiet install-poetry @$(MAKE) --quiet setup-poetry @$(MAKE) --quiet setup-environment-variables - @echo "Installed the 'ScandEval' project. If you want to use pre-commit hooks, run 'make install-pre-commit'." + @echo "Installed the 'AlexandraAI-data' project. If you want to use pre-commit hooks, run 'make install-pre-commit'." install-pre-commit: ## Install pre-commit hooks @poetry run pre-commit install