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VFB_scRNAseq_FBlc0005515.owl
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VFB_scRNAseq_FBlc0005515.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://virtualflybrain.org/data/VFB/OWL/VFB_scRNAseq_FBlc0005515.owl#"
xml:base="http://virtualflybrain.org/data/VFB/OWL/VFB_scRNAseq_FBlc0005515.owl"
xmlns:RO="http://purl.obolibrary.org/obo/RO_"
xmlns:BAO="http://www.bioassayontology.org/bao#BAO_"
xmlns:BFO="http://purl.obolibrary.org/obo/BFO_"
xmlns:IAO="http://purl.obolibrary.org/obo/IAO_"
xmlns:OBI="http://purl.obolibrary.org/obo/OBI_"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:vfb="http://virtualflybrain.org/reports/"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:FBbt="http://purl.obolibrary.org/obo/FBbt_"
xmlns:FBcv="http://purl.obolibrary.org/obo/FBcv_"
xmlns:FBdv="http://purl.obolibrary.org/obo/FBdv_"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:linkml="https://w3id.org/linkml/"
xmlns:FlyBase="http://flybase.org/reports/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:neo_custom="http://n2o.neo/custom/"
xmlns:neo_property="http://n2o.neo/property/">
<owl:Ontology rdf:about="http://virtualflybrain.org/data/VFB/OWL/VFB_scRNAseq_FBlc0005515.owl">
<dcterms:description>An ontology of Drosophila melanogaster scRNAseq data from a single dataset (FBlc0005515). This information is taken from FlyBase, which sources it from the EMBL-EBI Single Cell Expression Atlas, which compiles scRNAseq data from multiple sources.</dcterms:description>
<dcterms:title>VFB scRNAseq Ontology for dataset FBlc0005515</dcterms:title>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/VFB_scRNAseq/expression_data/VFB_scRNAseq_exp_FBlc0005515.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/VFB_scRNAseq/imports/FBlc0005515_import.owl"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://n2o.neo/custom/accession -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/accession"/>
<!-- http://n2o.neo/custom/cell_count -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_count"/>
<!-- http://n2o.neo/custom/filtered_gene_count -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/filtered_gene_count"/>
<!-- http://n2o.neo/custom/total_gene_count -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/total_gene_count"/>
<!-- http://n2o.neo/property/nodeLabel -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/property/nodeLabel"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/licence -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/licence"/>
<!-- http://purl.org/dc/terms/references -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/references"/>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<!-- http://www.w3.org/2002/07/owl#imports -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#imports"/>
<!--
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//
// Object Properties
//
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-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312"/>
<!-- http://purl.obolibrary.org/obo/RO_0002131 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002131"/>
<!-- http://purl.obolibrary.org/obo/RO_0002233 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
<!-- http://purl.obolibrary.org/obo/RO_0002352 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002352"/>
<!-- http://purl.obolibrary.org/obo/RO_0002473 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002473"/>
<!-- http://purl.obolibrary.org/obo/RO_0002490 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002490"/>
<!-- http://www.bioassayontology.org/bao#BAO_0000212 -->
<owl:ObjectProperty rdf:about="http://www.bioassayontology.org/bao#BAO_0000212"/>
<!--
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//
// Classes
//
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-->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00003624"/>
<!-- http://purl.obolibrary.org/obo/FBbt_00003702 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00003702"/>
<!-- http://purl.obolibrary.org/obo/FBbt_00004211 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004211"/>
<!-- http://purl.obolibrary.org/obo/FBbt_00007004 -->
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<!-- http://purl.obolibrary.org/obo/FBbt_00007011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00007011"/>
<!-- http://purl.obolibrary.org/obo/FBbt_00047095 -->
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<!-- http://purl.obolibrary.org/obo/FBbt_00047841 -->
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<!-- http://purl.obolibrary.org/obo/FBbt_00049825 -->
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<!-- http://purl.obolibrary.org/obo/FBbt_00051299 -->
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<!-- http://purl.obolibrary.org/obo/FBbt_00110061 -->
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<!-- http://purl.obolibrary.org/obo/FBcv_0003023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0003023"/>
<!-- http://purl.obolibrary.org/obo/FBcv_0003024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0003024"/>
<!-- http://purl.obolibrary.org/obo/FBcv_0003025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0003025"/>
<!-- http://purl.obolibrary.org/obo/FBcv_0009000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0009000"/>
<!-- http://purl.obolibrary.org/obo/FBcv_0009002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0009002"/>
<!-- http://purl.obolibrary.org/obo/FBcv_0009003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0009003"/>
<!-- http://purl.obolibrary.org/obo/FBcv_0009008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBcv_0009008"/>
<!-- http://purl.obolibrary.org/obo/FBdv_00005369 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBdv_00005369"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://flybase.org/reports/FBlc0005515 -->
<owl:NamedIndividual rdf:about="http://flybase.org/reports/FBlc0005515">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/FBcv_0003023"/>
<rdf:type>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBcv_0009000"/>
</owl:Restriction>
</rdf:type>
<neo_custom:filtered_gene_count rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">50290</neo_custom:filtered_gene_count>
<neo_custom:total_gene_count rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">303135</neo_custom:total_gene_count>
<neo_property:nodeLabel>DataSet</neo_property:nodeLabel>
<obo:IAO_0000115>Single-cell RNA-seq study of adult brain without cocaine exposure</obo:IAO_0000115>
<dcterms:licence rdf:resource="http://virtualflybrain.org/reports/VFBlicense_CC_BY_4_0"/>
<dcterms:references rdf:resource="http://flybase.org/reports/FBrf0251482"/>
<oboInOwl:hasDbXref rdf:resource="http://virtualflybrain.org/reports/scExpressionAtlas"/>
<rdfs:label>scRNAseq_2021_Baker_CTRL</rdfs:label>
</owl:NamedIndividual>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://flybase.org/reports/FBlc0005515"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<owl:annotatedTarget rdf:resource="http://virtualflybrain.org/reports/scExpressionAtlas"/>
<neo_custom:accession>E-GEOD-152495</neo_custom:accession>
</owl:Axiom>
<!-- http://flybase.org/reports/FBlc0005516 -->
<owl:NamedIndividual rdf:about="http://flybase.org/reports/FBlc0005516">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/FBcv_0003024"/>
<rdf:type>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBbt_00007011"/>
</owl:Restriction>
</rdf:type>
<rdf:type>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBbt_00003624"/>
</owl:Restriction>
</rdf:type>
<rdf:type>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002490"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005369"/>
</owl:Restriction>
</rdf:type>
<obo:RO_0002352 rdf:resource="http://flybase.org/reports/FBlc0005517"/>
<neo_property:nodeLabel>Sample</neo_property:nodeLabel>
<obo:IAO_0000115>Dissociated cells from female adult brains without cocaine exposure</obo:IAO_0000115>
<dcterms:source rdf:resource="http://flybase.org/reports/FBlc0005515"/>
<rdfs:label>scRNAseq_2021_Baker_CTRL_FEMALE</rdfs:label>
</owl:NamedIndividual>
<!-- http://flybase.org/reports/FBlc0005517 -->
<owl:NamedIndividual rdf:about="http://flybase.org/reports/FBlc0005517">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/FBcv_0003025"/>
<rdf:type>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.bioassayontology.org/bao#BAO_0000212"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBcv_0009008"/>
</owl:Restriction>
</rdf:type>
<obo:RO_0002233 rdf:resource="http://flybase.org/reports/FBlc0005516"/>
<neo_property:nodeLabel>Assay</neo_property:nodeLabel>
<obo:IAO_0000115>Single-cell RNA-seq of dissociated cells from female adult brains without cocaine exposure</obo:IAO_0000115>
<dcterms:source rdf:resource="http://flybase.org/reports/FBlc0005515"/>
<rdfs:label>scRNAseq_2021_Baker_CTRL_FEMALE_seq</rdfs:label>
</owl:NamedIndividual>
<!-- http://flybase.org/reports/FBlc0005518 -->
<owl:NamedIndividual rdf:about="http://flybase.org/reports/FBlc0005518">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/FBcv_0009002"/>
<obo:BFO_0000051 rdf:resource="http://flybase.org/reports/FBlc0005516"/>
<obo:BFO_0000051 rdf:resource="http://flybase.org/reports/FBlc0005517"/>
<obo:IAO_0000115>Clustering analysis of dissociated cells from female adult brains without cocaine exposure</obo:IAO_0000115>
<dcterms:source rdf:resource="http://flybase.org/reports/FBlc0005515"/>
<rdfs:label>scRNAseq_2021_Baker_CTRL_FEMALE_seq_clustering</rdfs:label>
</owl:NamedIndividual>
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