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COVIDMINDER

Revealing regional disparities in outcomes, determinants, and mediations of the COVID-19 pandemic

COVIDMINDER reveals the regional disparities in outcomes, determinants, and mediations of the COVID-19 pandemic. Outcomes are the direct effects of COVID-19. Social and Economic Determinants are pre-existing risk factors that impact COVID-19 outcomes. Mediations are resources and programs used to combat the pandemic.

Usage

Production Deployment (deployed 10 Apr 2020; updated daily)

Local Installation

To deploy locally:

  • Clone the github repository
  • In R:
    • setwd() to the COVIDMINDER directory
    • source("data_downloaders/source_downloaders.R")
  • Run app.R in RStudio (ie in the source code pane, simply select "Run App" on the top right corner)

Data Sources: Updated daily! (See also data subdirectories)

JHU CSSE
COVID Tracking Project
Organisation for Economic Co-operation and Development
Kaiser Family Foundation
CDC
County Health Rankings
heath.data.ny.gov

Project structure

  • app.R: The main application file which includes the Shiny application code for both UI and server.
  • README.md: The file includes the documentation for this project.
  • /modules: The application is divided into several modules based on their functions which are all located inside this directory.
  • /data: This directory includes all the data files used in the project, including both json as well as CSV files.
  • /LDI: This directory includes all the LDI related Rmd and HTML files.
  • /www: Files associated esp. with HTML stylin'
  • /data_downloaders: Scripts for manually pulling data from various sources