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paper.bib
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%Joss references are down below here
@article{bozkurt2022patient,
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author={Bozkurt, Selim and Paracha, Waleed and Bakaya, Kaushiki and Schievano, Silvia},
journal={Cardiovascular Engineering and Technology},
doi = {10.1007/s13239-022-00611-9},
pages={1--13},
year={2022},
publisher={Springer}
}
@article{holmes2018clinical,
title={Clinical applications of patient-specific models: The case for a simple approach},
author={Holmes, Jeffrey W and Lumens, Joost},
journal={Journal of cardiovascular translational research},
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volume={11},
number={2},
pages={71--79},
year={2018},
publisher={Springer}
}
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}
@article{stergiopulos1996determinants,
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@article{korakianitis2006numerical,
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@article{smith2004minimal,
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@book{westerhof2010snapshots,
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@article{shi2011review,
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}
@article{mynard2012simple,
title={A simple, versatile valve model for use in lumped parameter and one-dimensional cardiovascular models},
author={Mynard, JP and Davidson, MR and Penny, DJ and Smolich, JJ2946553},
journal={International Journal for Numerical Methods in Biomedical Engineering},
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number={6-7},
pages={626--641},
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}
@article{laubscher2022dynamic,
title={Dynamic simulation of aortic valve stenosis using a lumped parameter cardiovascular system model with flow regime dependent valve pressure loss characteristics},
author={Laubscher, Ryno and van der Merwe, Johan and Liebenberg, Jacques and Herbst, Philip},
journal={Medical Engineering \& Physics},
doi = {10.1016/j.medengphy.2022.103838},
volume={106},
pages={103838},
year={2022},
publisher={Elsevier}
}
@article{westerhof2009arterial,
title={The arterial windkessel},
author={Westerhof, Nico and Lankhaar, Jan-Willem and Westerhof, Berend E},
journal={Medical \& biological engineering \& computing},
doi = {10.1007/s11517-008-0359-2},
volume={47},
number={2},
pages={131--141},
year={2009},
publisher={Springer}
}
@article{sepulveda2022openmodelica,
title={OpenModelica-based virtual simulator for the cardiovascular and respiratory physiology of a neonate},
author={Sep{\'u}lveda Oviedo, Edgar Hernando and Bermeo Clavijo, Leonardo Enrique and M{\'e}ndez C{\'o}rdoba, Luis Carlos},
journal={Journal of Medical Engineering \& Technology},
doi = {10.1080/03091902.2022.2026500},
volume={46},
number={3},
pages={179--197},
year={2022},
publisher={Taylor \& Francis}
}
@article{dash2022non,
title={Non-invasive detection of coronary artery disease from photoplethysmograph using lumped parameter modelling},
author={Dash, Ashutosh and Jain, Karan and Ghosh, Nirmalya and Patra, Amit},
journal={Biomedical Signal Processing and Control},
doi = {10.1016/j.bspc.2022.103781},
volume={77},
pages={103781},
year={2022},
publisher={Elsevier}
}
@inproceedings{matejak2014physiolibrary,
title={Physiolibrary-Modelica library for physiology},
author={Matej{\'a}k, Marek and Kulh{\'a}nek, Tom{\'a}{\v{s}} and {\v{S}}ilar, Jan and Privitzer, Pavol and Je{\v{z}}ek, Filip and Kofr{\'a}nek, Ji{\v{r}}{\'\i}},
booktitle={Proceedings of the 10th International Modelica Conference},
doi = {10.3384/ECP14096499},
volume={96},
pages={499--505},
year={2014},
organization={Link{\"o}ping University Electronic Press Lund}
}
@article{rosalia2021object,
title={Object-Oriented Lumped-Parameter Modeling of the Cardiovascular System for Physiological and Pathophysiological Conditions},
author={Rosalia, Luca and Ozturk, Caglar and Van Story, David and Horvath, Markus A and Roche, Ellen T},
journal={Advanced Theory and Simulations},
doi = {10.1002/adts.202000216},
volume={4},
number={3},
pages={2000216},
year={2021},
publisher={Wiley Online Library}
}
@article{cuellar2003overview,
title={An overview of CellML 1.1, a biological model description language},
author={Cuellar, Autumn A and Lloyd, Catherine M and Nielsen, Poul F and Bullivant, David P and Nickerson, David P and Hunter, Peter J},
journal={Simulation},
doi = {10.1177/0037549703040939},
volume={79},
number={12},
pages={740--747},
year={2003},
publisher={Sage Publications}
}
@article{hucka2003systems,
title={The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models},
author={Hucka, Michael and Finney, Andrew and Sauro, Herbert M and Bolouri, Hamid and Doyle, John C and Kitano, Hiroaki and Arkin, Adam P and Bornstein, Benjamin J and Bray, Dennis and Cornish-Bowden, Athel and others},
journal={Bioinformatics},
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volume={19},
number={4},
pages={524--531},
year={2003},
publisher={Oxford University Press}
}
@misc{ma2021modelingtoolkit,
title={ModelingToolkit: A Composable Graph Transformation System For Equation-Based Modeling},
author={Yingbo Ma and Shashi Gowda and Ranjan Anantharaman and Chris Laughman and Viral Shah and Chris Rackauckas},
year={2021},
doi = {10.48550/arXiv.2103.05244},
eprint={2103.05244},
archivePrefix={arXiv},
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}
@article{schweiger2020modeling,
title={Modeling and simulation of large-scale systems: A systematic comparison of modeling paradigms},
author={Schweiger, Gerald and Nilsson, Henrik and Schoeggl, Josef and Birk, Wolfgang and Posch, Alfred},
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doi = {10.48550/arXiv.1909.00484},
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pages={124713},
year={2020},
publisher={Elsevier}
}
@misc{CellMLToolKit,
title = {{CellMLToolkit.jl}: a {J}ulia library that connects {C}ell{M}{L} models to {S}ci{ML}},
author = { Shahriar Iravanian and {others}},
year = {2021},
howpublished = {\url{https://github.com/SciML/CellMLToolkit.jl}}
}
@article{tinnerholm2022modular,
title={A Modular, Extensible, and Modelica-Standard-Compliant OpenModelica Compiler Framework in Julia Supporting Structural Variability},
author={Tinnerholm, John and Pop, Adrian and Sj{\"o}lund, Martin},
journal={Electronics},
doi = {10.3390/electronics11111772},
volume={11},
number={11},
pages={1772},
year={2022},
publisher={MDPI}
}
@article{Dixit2022, doi = {10.21105/joss.04561}, url = {https://doi.org/10.21105/joss.04561}, year = {2022}, publisher = {The Open Journal}, volume = {7}, number = {76}, pages = {4561}, author = {Vaibhav Kumar Dixit and Christopher Rackauckas}, title = {GlobalSensitivity.jl: Performant and Parallel Global Sensitivity Analysis with Julia}, journal = {Journal of Open Source Software} }
@article{rackauckas2020universal,
title={Universal differential equations for scientific machine learning},
author={Rackauckas, Christopher and Ma, Yingbo and Martensen, Julius and Warner, Collin and Zubov, Kirill and Supekar, Rohit and Skinner, Dominic and Ramadhan, Ali and Edelman, Alan},
journal={arXiv preprint arXiv:2001.04385},
doi = {10.48550/arXiv.2001.04385},
year={2020}
}
@article{rackauckas2017differentialequations,
title={Differentialequations. jl--a performant and feature-rich ecosystem for solving differential equations in julia},
author={Rackauckas, Christopher and Nie, Qing},
doi = {10.5334/jors.151},
journal={Journal of open research software},
volume={5},
number={1},
year={2017},
publisher={Ubiquity Press}
}
@article{Shi2018,
title = {Construction of lumped-parameter cardiovascular models using the CellML language},
volume = {42},
url = {https://doi.org/10.1080/03091902.2019.1576792},
doi = {10.1080/03091902.2019.1576792},
number = {7},
journal = {Journal of Medical Engineering \& Technology},
author = {Shi, Yubing and Lawford, Patricia and Hose, D. Rodney},
year = {2018},
note = {Publisher: Taylor \& Francis tex.eprint: https://doi.org/10.1080/03091902.2019.1576792}
}