IndexError: list index out of range

[josenimo]

Dear @VictorDidier,

Thank you for developing this nice package. I am currently testing the docker container implementation and I am running into an isssue. I am using a small sample data set, which has 000 -> 003 cycles. Thank you for your help and let me know what other information I can provide.

Output before crashing (for every exposure level):

(base) mambauser@b2a9af1b8e0f:/stack_macsima$ python macsima2mc.py -i /data -o /data/output -c 1 3
extracting antigen cycle: 1
extracting bleaching cycle: 0
extracting bleaching cycle: 0
extracting bleaching cycle: 0
extracting antigen cycle: 2
extracting bleaching cycle: 1
extracting bleaching cycle: 1
extracting bleaching cycle: 1
extracting antigen cycle: 3
Traceback (most recent call last):
  File "/stack_macsima/macsima2mc.py", line 611, in <module>
    main()
  File "/stack_macsima/macsima2mc.py", line 568, in main
    antigen_stack_info=create_stack(antigen_info,antigen_cycle_no=i,exp_level=e)
  File "/stack_macsima/macsima2mc.py", line 473, in create_stack
    exp=groupB.loc[(groupB['marker']==s) & (groupB['fov']==1) & (groupB['exposure_level']==exp_level),'exposure'].tolist()[0]
IndexError: list index out of range

Link to sample dataset:
https://filetransfer.mdc-berlin.de/?u=dTzagkaQ&p=C6fa7U32

Best,
Jose