diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 9bf69903..f0d895cc 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -32,4 +32,4 @@ jobs: . venv/bin/activate pushd src/lib python -m pip install -r requirements.txt -r requirements-dev.txt - python -m pytest SmiServices/*.py \ No newline at end of file + python -m pytest SmiServices/*.py diff --git a/doc/annotation_service_docker.md b/doc/annotation_service_docker.md index fb972830..5b9a7479 100644 --- a/doc/annotation_service_docker.md +++ b/doc/annotation_service_docker.md @@ -89,4 +89,3 @@ docker exec -it $(docker ps|grep annotation_server|awk '{print$1}') /bin/bash docker login docker push howff/annotation_server ``` - diff --git a/doc/cui_sop.txt b/doc/cui_sop.txt index 81f8882e..ff8c5c0c 100644 --- a/doc/cui_sop.txt +++ b/doc/cui_sop.txt @@ -280,4 +280,3 @@ sort -u <(jq -r < *lts/doc0001.json '.annotations[]|.cui') <(jq -r < *lts/doc011 sed -e "s/^/'/" -e "s/$/'/" | paste -s -d ',' explain analyze select semehr_results from semehr_results where sopinstanceuid = any (array(select SOPInstanceUID from cui_sop where cui IN ('C0000726','C0001511','C0003611', ..., 'C4553491'))); - diff --git a/src/ehost/annotationadmin.xml b/src/ehost/annotationadmin.xml index ad05e6ef..90691c2e 100644 --- a/src/ehost/annotationadmin.xml +++ b/src/ehost/annotationadmin.xml @@ -1 +1 @@ - \ No newline at end of file + diff --git a/src/ehost/eHOST.sys b/src/ehost/eHOST.sys index 96526e92..98ac7b6f 100644 --- a/src/ehost/eHOST.sys +++ b/src/ehost/eHOST.sys @@ -39,4 +39,3 @@ true [RESTFUL_SERVER] false - diff --git a/src/ehost/test1/config/projectschema.xml b/src/ehost/test1/config/projectschema.xml index 63b91d09..4ef7134f 100644 --- a/src/ehost/test1/config/projectschema.xml +++ b/src/ehost/test1/config/projectschema.xml @@ -35,4 +35,3 @@ - diff --git a/src/tools/ehost.sh b/src/tools/ehost.sh index 8fd9d02e..5c37203b 100755 --- a/src/tools/ehost.sh +++ b/src/tools/ehost.sh @@ -19,4 +19,3 @@ cp $data_dir/mtsamples_ihi_docs/doc000?.txt $ehost_dir/$ehost_project cd $ehost_dir java -jar ehost-1.31-SNAPSHOT.jar - diff --git a/src/tools/mongo_init_01.js b/src/tools/mongo_init_01.js index 7aaa97f9..26fd3d15 100644 --- a/src/tools/mongo_init_01.js +++ b/src/tools/mongo_init_01.js @@ -19,4 +19,3 @@ db.createUser( ); // No need to do this, next script will restart mongo: db.adminCommand( { shutdown: 1 } ) - diff --git a/src/tools/mongo_init_02.sh b/src/tools/mongo_init_02.sh index 79a0ec85..8a0c201d 100755 --- a/src/tools/mongo_init_02.sh +++ b/src/tools/mongo_init_02.sh @@ -19,4 +19,3 @@ else # New style service sudo systemctl restart mongod fi - diff --git a/src/tools/sample_SR.sh b/src/tools/sample_SR.sh index 7f669eec..53fca5ac 100755 --- a/src/tools/sample_SR.sh +++ b/src/tools/sample_SR.sh @@ -45,4 +45,3 @@ sed -n -e 's,\\,\\\\,' -e '2,$s/,/ /gp' sample_SR.csv | while read id sop series fi done -