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I am using the command pytest -m "not smoke" --doctest-modules -v --pyargs giga_auto_qc and the output is below. It seems to be looking in /home/haoting/projects/giga_auto_qc/giga_auto_qc/data/test_data/ds000017-fmriprep22.0.1-downsampled for the test data (which I have downloaded to data/test_data/) so gets permission denied. I can't figure out how to fix this, I tried using an absolute path in test_cli.py
That's because the bidslayout in the download data was indexed on my machine. You will need to set reindexing to true
And I should delete the SQL database in the test data ....
htwangtw
changed the title
How to change the path when running a test?
Remove layout.sqlite in the test data
Sep 1, 2023
I am using the command
pytest -m "not smoke" --doctest-modules -v --pyargs giga_auto_qc
and the output is below. It seems to be looking in/home/haoting/projects/giga_auto_qc/giga_auto_qc/data/test_data/ds000017-fmriprep22.0.1-downsampled
for the test data (which I have downloaded todata/test_data/
) so gets permission denied. I can't figure out how to fix this, I tried using an absolute path intest_cli.py
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