nf_core-base-srlab-500GB-node.config

/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    nf-core/rnaseq Nextflow base config file modified by Sam White on 20220321 for use
    on Roberts Lab 500GB Mox node.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    A 'blank slate' config file, appropriate for general use on most high performance
    compute environments. Assumes that all software is installed and available on
    the PATH. Runs in `local` mode - all jobs will be run on the logged in environment.
----------------------------------------------------------------------------------------
*/

process {

    cpus   = 28
    memory = 500.GB
    time   = 30.d

    errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' }
    maxRetries    = 1
    maxErrors     = '-1'

    // Process-specific resource requirements
    withLabel:process_low {
        cpus   = 28
        memory = 500.GB
        time   = 30.d
    }
    withLabel:process_medium {
        cpus   = 28
        memory = 500.GB
        time   = 30.d
    }
    withLabel:process_high {
        cpus   = 28
        memory = 500.GB
        time   = 30.d
    }
    withLabel:process_long {
        time   = 30.d
    }
    withLabel:process_high_memory {
        memory = 500.GB
    }
    withLabel:error_ignore {
        errorStrategy = 'ignore'
    }
    withLabel:error_retry {
        errorStrategy = 'retry'
        maxRetries    = 2
    }
    withName:CUSTOM_DUMPSOFTWAREVERSIONS {
        cache = false
    }
}