08-Pipelines.Rmd

# Pipelines {#pipeline}

Here we present some of the workflows we commonly use. Note that you will have to make some modifications to get them to run on your setup, at the very least changing paths. Also note the date a workflow was last updated. Bioinformatics changes rapidly, and new tools and methods are constantly being developed.

RNA-seq
September 2018

RNA-seq without a reference
September 2018

16S Microbiome
September 2018

Variant Finding
September 2018

ChIP-seq
September 2018