Option to disable gui with -neuron option

[wvangeit]

For batch scripts, could you add an option that disables the GUI in the generated pyneuron scripts (when using the -neuron option of jnml).

[pgleeson]

Good idea. There could be a number of options for generating with/without GUI and even asking jnml to compile the mod files (correctly depending on the OS) and run the Neuron scripts, e.g.

• jnml MyLEMS.xml -neuron (just generate hoc & mod which when run have GUI)
• jnml MyLEMS.xml -neuron-nogui (just generate hoc & mod which when run have no GUI)
• jnml MyLEMS.xml -neuron-run (generate hoc & mod, compile mods & run with GUI)
• jnml MyLEMS.xml -neuron-run-nogui (just generated hoc & mod with GUI)

This is related to issue #12.

This won't get done until after OSB2014. @tarelli, this might be useful for you too for generating Neuron code to run for Geppetto.

[pgleeson]

Enabled in latest development version:

jnml MyLEMS.xml -neuron -nogui

[pgleeson]

Implemented in latest development version:

jnml MyLEMS.xml -neuron -nogui -run

as long as env variable NEURON_HOME is set

[pgleeson]

Implemented in development branch. Will be merged into master for v2beta3