diff --git a/TMTIntegrator.yaml b/TMTIntegrator.yaml index 02057a5..cd73a02 100644 --- a/TMTIntegrator.yaml +++ b/TMTIntegrator.yaml @@ -1,6 +1,6 @@ -TMT-Integrator: - database: D:\2018-07-16-td-RefSeq.20180629_Human_ucsc_hg38_cpdbnr_mito_264contams.fasta # process a ready-to-use database - output_path: D:\ # output path +TMT-Integrator (parameters marked with '(required)' need to be filled): + database: D:\2018-07-16-td-RefSeq.20180629_Human_ucsc_hg38_cpdbnr_mito_264contams.fasta # process a ready-to-use database (required) + output_path: D:\ # output path (required) combined_report_path: # The path of combined report min_localization_prob: 0.9 # minimum phosphorylation probability min_pep_thres: 0.9 # minimum peptide probability @@ -19,4 +19,4 @@ TMT-Integrator: exclude_terms:sp|;tr|; # exclude proteinID with these terms used_mod:79.9663; # used peptides with the modification channel_num:10 # the number of TMT channels - reference_channel_tag:pool # the tag used for identifying reference channel \ No newline at end of file + reference_channel_tag:pool # the tag used for identifying reference channel