diff --git a/0.2/README.md b/0.2/README.md index a694eac..ec54cd2 100644 --- a/0.2/README.md +++ b/0.2/README.md @@ -2,3 +2,23 @@ ## UKB GWAS pipeline scripts written for Hail 0.2 These scripts were used to run the GWAS pipeline in Hail 0.2 for the [UK Biobank biomarker measurements](http://www.nealelab.is/blog/2019/9/16/biomarkers-gwas-results) + +Here is the order of script execution: + +1. irnt.biomarkers.py + +2. create_phenotype_summary.biomarkers.py + +3. build_pipelines.biomarkers.py + +4. create_ldsc_hm3_table.py + +5. load_mfi_ht.py + +6. run_regressions.biomarkers.py + +7. load_results_matrix_table.biomarkers.py + +8. export_results.biomarkers.py + +9. export_ldsc_sumstats_biomarkers.py