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Running NGI pipeline with multiple flowcells #312

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Smeds opened this issue Oct 29, 2015 · 1 comment
Open

Running NGI pipeline with multiple flowcells #312

Smeds opened this issue Oct 29, 2015 · 1 comment

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@Smeds
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Smeds commented Oct 29, 2015

It would be nice if the NGI pipeline could be able to detect already organized flowcells, and include them in the analysis" when starting an analyzsis from flowcell folder.

Right now you have to start analysis from a project folder to inlcude data from multiple flowcells.
@parlundin
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I think that NGI-pipeline includes all FCs (even when starting from FC) but in the case the sample already been analysed and have status ANALYZED in Charon the analysis will not be started. So when new seqrun is added to a sample the status should be set to TO_ANALYZE.

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@Smeds @parlundin