From a82c849affd489970541c3a5e1d26325b06c20e4 Mon Sep 17 00:00:00 2001
From: glrs <5999366+glrs@users.noreply.github.com>
Date: Mon, 14 Oct 2024 15:25:47 +0200
Subject: [PATCH] Fix the base_dir path to lead to "projects" dir

---
 lib/realms/tenx/utils/sample_file_handler.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/lib/realms/tenx/utils/sample_file_handler.py b/lib/realms/tenx/utils/sample_file_handler.py
index 2ac8190..868d53d 100644
--- a/lib/realms/tenx/utils/sample_file_handler.py
+++ b/lib/realms/tenx/utils/sample_file_handler.py
@@ -41,7 +41,9 @@ def __init__(self, sample: Any) -> None:
         self.config: Dict[str, Any] = sample.config
 
         # Define sample folder structure
-        self.base_dir: Path = Path(self.config["10x_dir"]) / self.project_name
+        self.base_dir: Path = (
+            Path(self.config["10x_dir"]) / "projects" / self.project_name
+        )
         self.sample_dir: Path = self.base_dir / self.sample_id
         self.fastq_files_dir: Path = self.base_dir / "fastq_files"