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refactor 'task_lists' into 'pipelines' #35

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stevekm opened this issue Nov 20, 2017 · 0 comments
Open
3 tasks

refactor 'task_lists' into 'pipelines' #35

stevekm opened this issue Nov 20, 2017 · 0 comments
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stevekm commented Nov 20, 2017

Going to need to include more analysis config information in the task_lists.yml files, need to formally refactor this into a 'pipeline' to encompass these extra configs. Example:

  • (qsub) log dir
  • cluster scheduler method (e.g. qsub, SLURM, etc)
  • file to get sample IDs from, method for sample ID import
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