From 56ec964c169e0a4c01959f9fc54b4c94041d7839 Mon Sep 17 00:00:00 2001
From: Qiao Qiao <68757394+qiaouchicago@users.noreply.github.com>
Date: Tue, 4 Jun 2024 09:28:17 -0500
Subject: [PATCH] DEV-2705 poam update deps (#111)

* update deps

* update tox.ini

* solve comments

* recompile deps with --index-url
---
 .gitlab-ci.yml   |  2 +-
 requirements.txt | 27 ++++++++++++++-------------
 setup.py         |  5 +++--
 3 files changed, 18 insertions(+), 16 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 79962e2b..c687b7e0 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -18,7 +18,7 @@ pre-commit:
 tox:
   parallel:
     matrix:
-      - BUILD_PY_VERSION: [python3.7, python3.8, python3.9, python3.10, python3.11]
+      - BUILD_PY_VERSION: [python3.7, python3.8, python3.9, python3.10]
   services:
     - name: docker.osdc.io/ncigdc/ci-postgres-13:${BASE_CONTAINER_VERSION}
       alias: postgres
diff --git a/requirements.txt b/requirements.txt
index e98b3cff..884fa844 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -17,27 +17,27 @@ cattrs==23.1.2
     # via ddtrace
 cdislogging==1.1.1
     # via indexd (setup.py)
-certifi==2023.11.17
+certifi==2024.2.2
     # via requests
 charset-normalizer==3.3.2
     # via requests
 click==8.1.7
     # via flask
-ddsketch==2.0.4
+ddsketch==3.0.1
     # via ddtrace
-ddtrace==2.4.0
+ddtrace==2.8.4
     # via indexd (setup.py)
 deprecated==1.2.14
     # via opentelemetry-api
-envier==0.5.0
+envier==0.5.1
     # via ddtrace
-exceptiongroup==1.2.0
+exceptiongroup==1.2.1
     # via cattrs
 flask==2.2.5
     # via indexd (setup.py)
-idna==3.6
+idna==3.7
     # via requests
-importlib-metadata==6.7.0 ; python_version < "3.8"
+importlib-metadata==6.5.0 ; python_version < "3.8"
     # via
     #   attrs
     #   click
@@ -51,11 +51,11 @@ importlib-resources==5.12.0
     # via jsonschema
 itsdangerous==2.1.2
     # via flask
-jinja2==3.1.2
+jinja2==3.1.4
     # via flask
 jsonschema==4.17.3
     # via indexd (setup.py)
-markupsafe==2.1.3
+markupsafe==2.1.5
     # via
     #   jinja2
     #   werkzeug
@@ -64,9 +64,7 @@ opentelemetry-api==1.22.0
 pkgutil-resolve-name==1.3.10
     # via jsonschema
 protobuf==4.24.4
-    # via
-    #   ddsketch
-    #   ddtrace
+    # via ddtrace
 psycopg2==2.9.9
     # via indexd (setup.py)
 pyrsistent==0.19.3
@@ -81,13 +79,16 @@ sqlalchemy==1.3.24
     # via
     #   indexd (setup.py)
     #   sqlalchemy-utils
-sqlalchemy-utils==0.41.1
+sqlalchemy-utils==0.41.2
     # via indexd (setup.py)
+sqlparse==0.4.4
+    # via ddtrace
 typing-extensions==4.5.0
     # via
     #   cattrs
     #   ddtrace
     #   importlib-metadata
+    #   indexd (setup.py)
     #   jsonschema
 urllib3==2.0.7
     # via requests
diff --git a/setup.py b/setup.py
index 059b5b67..03f80e13 100644
--- a/setup.py
+++ b/setup.py
@@ -36,7 +36,6 @@
             "pytest-flask",
             "PyYAML",
             "openapi-spec-validator",
-            # jsonschema-spec 0.1.6 depends on typing-extensions<4.6.0
             "jsonschema-spec>=0.1.6",  # used by openapi-spec-validator and have bug in 0.1.4
         ],
     },
@@ -49,6 +48,8 @@
         "cdislogging>=1.0",
         "requests",
         "ddtrace",
-        "importlib-metadata; python_version < '3.8'",
+        "importlib-metadata>=1.4; python_version < '3.8'",
+        # jsonschema-spec 0.1.6 depends on typing-extensions<4.6.0
+        "typing-extensions<4.6.0",
     ],
 )