diff --git a/Jenkinsfile b/Jenkinsfile deleted file mode 100644 index 4c84071..0000000 --- a/Jenkinsfile +++ /dev/null @@ -1,6 +0,0 @@ -#!groovy - -library identifier: "jenkins-lib@master" -scriptedLibPipeline{ - testRunner = "docker-compose" -} diff --git a/es-models/case_centric/case_centric.mapping.yaml b/es-models/case_centric/case_centric.mapping.yaml index 20f1e1c..a2c9dc1 100644 --- a/es-models/case_centric/case_centric.mapping.yaml +++ b/es-models/case_centric/case_centric.mapping.yaml @@ -803,6 +803,8 @@ properties: type: double updated_datetime: type: keyword + wgs_coverage: + type: keyword type: nested metadata: properties: @@ -1154,6 +1156,8 @@ properties: type: double updated_datetime: type: keyword + wgs_coverage: + type: keyword type: nested state: type: keyword @@ -1280,6 +1284,8 @@ properties: type: double updated_datetime: type: keyword + wgs_coverage: + type: keyword type: nested magnification: type: double @@ -1374,6 +1380,8 @@ properties: type: keyword updated_datetime: type: keyword + wgs_coverage: + type: keyword type: nested follow_ups: properties: diff --git a/es-models/gdc_from_graph/case.mapping.yaml b/es-models/gdc_from_graph/case.mapping.yaml index cf882f1..f4a2416 100644 --- a/es-models/gdc_from_graph/case.mapping.yaml +++ b/es-models/gdc_from_graph/case.mapping.yaml @@ -1028,6 +1028,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested metadata: properties: @@ -1492,6 +1495,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested state: normalizer: clinical_normalizer @@ -1650,6 +1656,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested magnification: type: double @@ -1769,6 +1778,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested follow_ups: properties: diff --git a/es-models/gdc_from_graph/file.mapping.yaml b/es-models/gdc_from_graph/file.mapping.yaml index 70372ba..e22e271 100644 --- a/es-models/gdc_from_graph/file.mapping.yaml +++ b/es-models/gdc_from_graph/file.mapping.yaml @@ -134,6 +134,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested metadata: properties: @@ -2562,6 +2565,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested state: normalizer: clinical_normalizer @@ -2741,6 +2747,9 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword type: nested magnification: type: double @@ -2864,3 +2873,6 @@ properties: updated_datetime: normalizer: clinical_normalizer type: keyword + wgs_coverage: + normalizer: clinical_normalizer + type: keyword