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[BUG] NET ERROR: index 1024 is out of bounds for axis 1 with size 1024 #1004
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is this image a z-stack or a single image? does it show up correctly in the GUI? if you have a z-stack then you want to open cellpose with |
It's a single image. Trying different approaches, I found a way in which It's run correctly. When uploading the image to the program, I was using the "use GPU" option and the problem which I was commenting appeared. However, if I do not choose this option, the progrma runs correctly. Anyway, thanks so much for your answer. |
Weird thanks for the update, somehow the GPU torch version isn't work, I would also try updating to the latest version v3.0.11 ( |
GPU in this case is MPS |
I am also having this problem, only when running on GPU (CPU works OK). The error trace is:
|
Having the same issue on MacOS, cellpose 3.0.11, 2D images (IndexError in line 194 |
Hello, I'm new to cellpose and I find an error when upload my file to the program.
When I upload an RGB image and run the cyto3 model to segment the image (to later train a custom model) using the gui, an error NET ERROR: index 1024 is out of bounds for axis 1 with size 1024 appears, so no mask are found, and also no segmentation is performed.
I don't really know if I need to manually draw the mask of the cells that I want to segment before running the cyto3 model.
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