How to install

[anitagh]

It was very hard to get the Azimuth 2.0 installed in Python 2.7 so I thought I share my experience with others.

1. Do not use the docker image that was created back in 2017. The results generated by the docker image doesn't match the ones generated by the GPP Web portal (https://portals.broadinstitute.org/gpp/public/)

2. Use the following instructions to install it in Python 2.7 and the results match the GPP Web portal

1 conda create --name azimuth python=2.7
2 conda activate azimuth
3 conda install biopython
4 conda install scikit-learn=0.17.1
5 pip install 'numpy==1.12.1'
6 pip install azimuth