Harmonizome-KG: Visualizing Gene-Term Relations Across 120+ Datasets Processed Datasets Included in Harmonizome-KG
Source
Genes
Terms
Edges
Achilles
4831
216
104046
HuBMAP Azimuth Cell Type
3560
1426
13794
Biocarta
1397
254
4509
BioGPS Human
16379
84
205445
BioGPS Mouse
15437
74
170878
BioGPS NCI-60
12628
93
204284
ABA Adult Human
17979
414
1115464
ABA Adult Mouse
14248
2219
3178416
ABA Developmental Human Microarray
17238
492
1270962
ABA Developmental Human RNA Seq
15072
524
1183125
ABA Prenatal Human
18949
516
1464892
CCLE CNV
23264
1036
1148953
CCLE Gene Expression
18025
1035
751223
CCLE Mutations
1667
904
105921
CCLE Proteomics
8959
375
122680
CellMarker
13607
7219
65981
ChEA Binding Site 2022
17962
757
917047
ChEA TF Targets
21224
199
386776
ClinVar
2458
3291
3638
CMAP Small Molecule Perturbations
12148
6100
1201897
CORUM
2799
2066
9015
COSMIC CNV
19757
950
102249
COSMIC Mutations
17850
1026
746376
CTD Chemical
11125
9516
124344
CTD Disease
17255
5218
888519
dbGAP
5668
510
12769
DeepCoverMOA
7750
874
173748
DepMap Gene Dependency
15946
1095
697098
DEPOD
293
112
819
DrugBank
2368
4928
15261
ENCODE Histone Modification
22007
435
4454173
ENCODE TF Binding
22845
1679
8803973
ENCODE TF Targets
22452
181
1655383
Roadmap Epigenomics DNA Methylation
13691
24
49516
Roadmap Epigenomics Histone Modification
21032
383
1201230
Roadmap Epigenomics Gene Expression
12824
57
109318
GAD Cell Line
10702
12778
75029
GAD High Level
8016
18
28200
GDSC
11704
624
280242
GeneRIF
15201
91041
2549276
GeneSigDB
19509
3515
416256
GEO Chem Perturbation
21336
415
318530
GEO Disease Perturbation
18516
233
139800
GEO Gene Perturbation
22020
738
367922
GEO Kinase Perturbation
19789
285
171000
GEO TF Perturbation
19279
154
151898
GEO Virus Perturbation
19779
366
222682
GlyGen
2231
1910
20486
GO Bio Process 2023
14811
12318
198050
GO Cellular Component 2023
11089
926
41883
GO Molecular Func 2023
12478
3851
50339
GTEx Aging Signatures
16047
135
67500
GTEx eQTL
149
7815
149
GTEx Tissue Sample
19249
2918
8421702
GTEx Tissue 2023
17369
53
108000
Guide To Pharm Chem
899
4894
9380
Guide To Pharm Protein
187
211
410
GWAS Catalog
4356
1007
8255
GWASdb Disease
11804
585
217330
GWASdb Phenotype
12487
822
274574
Heiser
15144
56
196872
HMDB
5326
22137
845725
HPA Cell Lines
15372
43
102943
HPA Tissue Samples
16658
121
303282
HPA Tissues mRNA
17426
31
81092
HPA Tissue Protein
15706
44
138585
HPM
4362
4
4362
HPO
3158
6842
304995
Hub Proteins
9362
289
58327
HuGE Navigator
12055
2715
141799
HumanCYC Pathways
932
286
1839
InterPro
18002
11015
62614
JASPAR PWMs
21375
111
148069
COMPARTMENTS Curated
16736
1463
328753
COMPARTMENTS Expts
6495
59
91061
COMPARTMENTS Text Mining
14375
2081
546634
DISEASES Curated
2252
770
18144
DISEASES Expts
4055
350
35164
DISEASES Text Mining
15309
4628
832622
TISSUES Curated
16215
643
357465
TISSUES Expts
15505
243
274154
TISSUES TextMining
16184
4187
1836577
KEA
3406
457
12161
KEGG
3947
200
9324
Kinase Library
5046
303
30299
LINCS KiNativ
102
23
149
LINCS KinomeScan
277
71
2057
Klijn CNV
24922
668
2495888
Klijn mRNA
13944
650
1357992
Klijn Mutations
14367
676
133818
KnockTF
17963
566
108820
IMPC Knockout
6763
667
36451
LINCS L1000 Chem Pert
12126
23913
5086167
LINCS L1000 CRISPR
9551
5049
2524500
LINCS CMAP Chemical
8347
31028
4189677
LOCATE Curated Protein
9639
78
79181
LOCATE Predicted Protein
19747
24
154700
MGI MPO
7798
8579
466673
MGI Phenotype
12894
10234
252920
MiRTarBase
12086
596
37415
MotifMap
20432
331
158860
MoTrPAC
12426
142
95052
MSigDB Comp Signatures
4869
356
41327
MSigDB Oncogenic Signatures
10765
90
29967
MW Metabolites
1068
731
5042
OMIM
4553
5540
6666
PANTHER
1962
145
4255
Pathway Commons
15747
15747
3527164
WikiPathways PFOCR
13173
35464
307416
PhosphoSitePlus Kinase
2447
359
6013
PhosphoSitePlus Disease
212
140
356
Phosphosite Textmining
2857
881
159580
PID Pathways
2510
223
8027
Proteomics DB
2776
53
21921
Reactome
7535
1638
83680
Sanger Dep Map
8230
949
189800
SILAC Drug Perturbation
2770
23
5808
SILAC Gene Perturbation
203
10
840
SILAC Ligand Perturbation
2022
9
5439
Tabula Sapiens
8184
469
46900
TargetScan Conserved
14923
1537
513997
TargetScan Nonconserved
18048
1539
627985
TCGA
19794
5904
4367061
VirusMINT Virus
706
68
1036
VirusMINT Viral Protein
706
185
1140
WikiPathways Pathways
6093
427
22242
Please acknowledge Enrichr-KG in your publications by citing the following reference: Evangelista JE, Xie Z, Marino GB, Nguyen N, Clarke DJB, Ma'ayan A. Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic Acids Res. 2023 May 11:gkad393. doi: 10.1093/nar/gkad393. PMID: 37166973.