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sleep_exposure <- format_data(short_long_sleep_ukb_final, type = "exposure")
sleep_exposure<-clump_data(sleep_exposure)
Please look at vignettes for options on running this locally if you need to run many instances of this command.
Clumping C0YOTH, 2835 variants, using EUR population reference
Removing 2829 of 2835 variants due to LD with other variants or absence from LD reference panel
Clumping IR1VnE, 1105 variants, using EUR population reference
Removing 1080 of 1105 variants due to LD with other variants or absence from LD reference panel
Clumping 6yiZWv, 3661 variants, using EUR population reference
No encoding supplied: defaulting to UTF-8.
Error in mtfrm.default(list(url = "http://gwas-api.mrcieu.ac.uk/ld/clump", :
cannot mtfrm
The text was updated successfully, but these errors were encountered:
Hi, I keep encountering errors when conducting clumping. Both TwoSampleMR and ieugwasr packages have been updated. Any insight is appreciated!!
ieugwasr::api_status()
options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')
sleep_exposure <- format_data(short_long_sleep_ukb_final, type = "exposure")
sleep_exposure<-clump_data(sleep_exposure)
Please look at vignettes for options on running this locally if you need to run many instances of this command.
Clumping C0YOTH, 2835 variants, using EUR population reference
Removing 2829 of 2835 variants due to LD with other variants or absence from LD reference panel
Clumping IR1VnE, 1105 variants, using EUR population reference
Removing 1080 of 1105 variants due to LD with other variants or absence from LD reference panel
Clumping 6yiZWv, 3661 variants, using EUR population reference
No encoding supplied: defaulting to UTF-8.
Error in mtfrm.default(list(url = "http://gwas-api.mrcieu.ac.uk/ld/clump", :
cannot mtfrm
The text was updated successfully, but these errors were encountered: