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Richard Gowers edited this page Aug 6, 2015 · 10 revisions

MDAnalysis uses lots of extensions, below is a list of them and their readiness for Python 3

Extension Description Language Python 3 ready?
coordinates._dcd DCD format reader CPython No (Cpython api changed)
coordinates.dcdtimeseries Timeseries for DCD Cpython No (as above)
lib._distances Distance calculations C / Cython Yes?
lib._distances_openmp Parallel of above C / Cython Yes?
lib.parallel.distances More parallel distances Cython Yes??
lib.qcprot RMSD via QCP Cython Yes?
lib._transformations Coordinate transformations C/CPython No (Rewrite interface)
lib.KDTree._KDTree KDTree for distance searches CPP/SWIG No (#383)
coordinates.xdrfile Gromacs format reader C/Swig No (#211)
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