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Example_jobs.txt
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Example_jobs.txt
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bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1010A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1010A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1011A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1011A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1101B.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1101B_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1103A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1103A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1104A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1104A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1107A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1107A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1108A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1108A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1207A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1207A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1209A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1209A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1211A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1211A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1302A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1302A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1304A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1304A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1305A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1305A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1308A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1308A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1309A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1309A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1311A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1311A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1312A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1312A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1402A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1402A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1405A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1405A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1406A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1406A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1408A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1408A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1409A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1409A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1410A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1410A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1412A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1412A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1503A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1503A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1505A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1505A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1507A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1507A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1508A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1508A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LL_1510A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LL_1510A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LLBB_1208A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LLBB_1208A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LLGFA_1308A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LLGFA_1308A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LLGFA_1309A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LLGFA_1309A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LLLB_1208A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LLLB_1208A_bowtie_to_1010A.sam
bowtie2 -f --no-unal -x /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/wba_1b_049_LL_1010A /gpfs/pace2/project/bio-konstantinidis/shared3/projects/WaterBodies/data/04.trimmed_fasta/LLOT_1208A.CoupledReads.fa -S /gpfs/scratch1/0/kgerhardt6/KG_Work/WB_HQ_BLAST/Sample_specific_contigs/WBA_1B_049_Contigs/bowtie_out/LLOT_1208A_bowtie_to_1010A.sam