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Refactor for lazy loading #189

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Refactor for lazy loading #189

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c479ca7
Initial refactor to class allowing lazy loading.
JoeZiminski Oct 14, 2023
2d57233
Add tests.
JoeZiminski Oct 15, 2023
517ee58
Add some documentation and refactoring.
JoeZiminski Oct 15, 2023
99e1450
Small fixes.
JoeZiminski Oct 15, 2023
e0288a9
Add example of lazy loading to README.md
JoeZiminski Oct 16, 2023
d17393d
Fix example in README.md
JoeZiminski Oct 16, 2023
7ad3e22
Fix README.md again.
JoeZiminski Oct 16, 2023
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5 changes: 4 additions & 1 deletion README.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,10 @@ Example usage
data_as_dict = ws.loadDataFile(filename='path/to/file.h5', format_string='single' )
# to get the raw analog channels in int16:
data_as_dict = ws.loadDataFile(filename='path/to/file.h5', format_string='raw' )

# lazy-loading of subsets of the data is also possible
with ws.PyWaveSurferData('path/to/file.h5', format_string="double") as wavesurfer_file:
sweep_1_subset = wavesurfer_file.get_traces(segment_index=0, start_frame=0, end_frame=500)
sweep_2_subset = wavesurfer_file.get_traces(segment_index=1, start_frame=0, end_frame=500)

Description of the content can be found in the documentation
`here <https://wavesurfer.janelia.org/manual-0.945/index.html#reading-acquired-data>`_.
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